Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC093755.1-201ENST00000512950 1023 ntBASIC2.53□□□□□ -2
FOXA1P55317 AC119751.5-201ENST00000514077 770 ntBASIC2.53□□□□□ -2
FOXA1P55317 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC2.53□□□□□ -2
FOXA1P55317 RNU1-103P-201ENST00000516502 125 ntBASIC2.53□□□□□ -2
FOXA1P55317 CKS1BP7-201ENST00000522230 235 ntBASIC2.53□□□□□ -2
FOXA1P55317 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.53□□□□□ -2
FOXA1P55317 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC2.53□□□□□ -2
FOXA1P55317 MTND2P26-201ENST00000528255 1029 ntBASIC2.53□□□□□ -2
FOXA1P55317 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC2.53□□□□□ -2
FOXA1P55317 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.53□□□□□ -2
FOXA1P55317 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.53□□□□□ -2
FOXA1P55317 AC027104.1-201ENST00000563702 681 ntBASIC2.53□□□□□ -2
FOXA1P55317 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.53□□□□□ -2
FOXA1P55317 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.53□□□□□ -2
FOXA1P55317 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC2.53□□□□□ -2
FOXA1P55317 AC135507.2-201ENST00000612443 309 ntBASIC2.53□□□□□ -2
FOXA1P55317 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC2.53□□□□□ -2
FOXA1P55317 AC024595.1-201ENST00000623088 387 ntBASIC2.53□□□□□ -2
FOXA1P55317 HPVC1-201ENST00000629899 1198 ntBASIC2.53□□□□□ -2
FOXA1P55317 MIR4496-201ENST00000635896 61 ntBASIC2.53□□□□□ -2
FOXA1P55317 AL163152.1-201ENST00000642001 374 ntBASIC2.53□□□□□ -2
FOXA1P55317 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.53□□□□□ -2
FOXA1P55317 AC092447.7-201ENST00000422212 1621 ntBASIC2.53□□□□□ -2
FOXA1P55317 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.53□□□□□ -2.01
FOXA1P55317 MTCO1P18-201ENST00000455518 1419 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AC093010.3-201ENST00000570269 15214 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 MTND4P34-201ENST00000572715 1371 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA1P55317 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA1P55317 ENSAP3-201ENST00000312710 333 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA1P55317 AL122016.1-201ENST00000403365 367 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 PRRC2CP1-201ENST00000404428 159 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AC092745.2-202ENST00000411880 369 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA1P55317 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA1P55317 AL158825.1-201ENST00000414735 521 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 USP9YP20-201ENST00000419224 558 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 RPS15AP40-201ENST00000419621 391 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 SETP8-201ENST00000435341 628 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 HIGD1AP11-201ENST00000438361 280 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA1P55317 AP000705.1-201ENST00000454567 350 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 snoU13.7-201ENST00000459220 104 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 RPL31P13-201ENST00000484151 370 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA1P55317 AC011825.1-201ENST00000484967 388 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 RPS27P27-201ENST00000498779 255 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA1P55317 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA1P55317 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA1P55317 SETP12-201ENST00000514068 805 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 RNA5SP282-201ENST00000516355 108 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA1P55317 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA1P55317 AC090136.1-201ENST00000520009 240 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AP003102.1-201ENST00000525638 661 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA1P55317 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.52□□□□□ -2.01
FOXA1P55317 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA1P55317 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA1P55317 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA1P55317 AC074029.1-201ENST00000552531 1044 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AL442163.2-201ENST00000553912 710 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA1P55317 LINC00557-201ENST00000563184 1279 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AC010653.1-201ENST00000571108 881 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA1P55317 AC012254.4-201ENST00000588843 273 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.52□□□□□ -2.01
FOXA1P55317 AC093732.2-201ENST00000607950 274 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AL359198.2-201ENST00000611836 194 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AL359535.1-201ENST00000612100 1087 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.52□□□□□ -2.01
FOXA1P55317 SAGE4P-201ENST00000442271 3381 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA1P55317 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
FOXA1P55317 CUL1P1-201ENST00000509510 2425 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA1P55317 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA1P55317 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC2.52□□□□□ -2.01
FOXA1P55317 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.52□□□□□ -2.01
FOXA1P55317 AC006378.2-201ENST00000623178 2476 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA1P55317 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA1P55317 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA1P55317 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXA1P55317 RNA5SP27-201ENST00000363839 119 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA1P55317 MIR887-201ENST00000401258 79 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 ATF1P1-201ENST00000406040 927 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 UBE2V1P11-201ENST00000411559 285 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA1P55317 RNFT1P2-201ENST00000443064 757 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.51□□□□□ -2.01
FOXA1P55317 RPS15AP1-201ENST00000457423 391 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 RPS26P21-201ENST00000475397 348 ntBASIC2.51□□□□□ -2.01
FOXA1P55317 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA1P55317 AC026412.2-201ENST00000512270 1075 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms