Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC013437.2-201ENST00000639587 677 ntBASIC3.61□□□□□ -1.83
VCPP55072 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VCPP55072 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.61□□□□□ -1.83
VCPP55072 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VCPP55072 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.6□□□□□ -1.83
VCPP55072 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
VCPP55072 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.6□□□□□ -1.83
VCPP55072 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VCPP55072 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VCPP55072 OR1L1-202ENST00000373686 1083 ntBASIC3.6□□□□□ -1.83
VCPP55072 LIPT1P1-201ENST00000415870 1186 ntBASIC3.6□□□□□ -1.83
VCPP55072 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.6□□□□□ -1.83
VCPP55072 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.6□□□□□ -1.83
VCPP55072 AC092634.2-201ENST00000428146 1010 ntBASIC3.6□□□□□ -1.83
VCPP55072 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.6□□□□□ -1.83
VCPP55072 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.6□□□□□ -1.83
VCPP55072 AC244505.3-201ENST00000454598 187 ntBASIC3.6□□□□□ -1.83
VCPP55072 MTATP6P14-201ENST00000455189 673 ntBASIC3.6□□□□□ -1.83
VCPP55072 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.6□□□□□ -1.83
VCPP55072 AC104982.1-201ENST00000478775 574 ntBASIC3.6□□□□□ -1.83
VCPP55072 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.6□□□□□ -1.83
VCPP55072 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 AC010374.2-201ENST00000512933 535 ntBASIC3.6□□□□□ -1.83
VCPP55072 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 MTATP6P9-201ENST00000515039 680 ntBASIC3.6□□□□□ -1.83
VCPP55072 RNU6-488P-201ENST00000515918 99 ntBASIC3.6□□□□□ -1.83
VCPP55072 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.6□□□□□ -1.83
VCPP55072 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC3.6□□□□□ -1.83
VCPP55072 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.6□□□□□ -1.83
VCPP55072 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.6□□□□□ -1.83
VCPP55072 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.6□□□□□ -1.83
VCPP55072 AL391834.2-201ENST00000609982 546 ntBASIC3.6□□□□□ -1.83
VCPP55072 AC099778.2-201ENST00000610904 211 ntBASIC3.6□□□□□ -1.83
VCPP55072 VN1R7P-201ENST00000619242 903 ntBASIC3.6□□□□□ -1.83
VCPP55072 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.6□□□□□ -1.83
VCPP55072 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VCPP55072 AL137790.1-201ENST00000634283 177 ntBASIC3.6□□□□□ -1.83
VCPP55072 AC099654.8-201ENST00000637757 681 ntBASIC3.6□□□□□ -1.83
VCPP55072 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
VCPP55072 AL513302.2-201ENST00000562313 1842 ntBASIC3.6□□□□□ -1.83
VCPP55072 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.59□□□□□ -1.83
VCPP55072 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VCPP55072 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VCPP55072 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
VCPP55072 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.59□□□□□ -1.83
VCPP55072 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.59□□□□□ -1.83
VCPP55072 RNU6-263P-201ENST00000363811 107 ntBASIC3.59□□□□□ -1.83
VCPP55072 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.59□□□□□ -1.83
VCPP55072 RNU6-1181P-201ENST00000384191 106 ntBASIC3.59□□□□□ -1.83
VCPP55072 USP9YP21-201ENST00000420603 432 ntBASIC3.59□□□□□ -1.83
VCPP55072 BX679664.1-201ENST00000434429 253 ntBASIC3.59□□□□□ -1.83
VCPP55072 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.59□□□□□ -1.83
VCPP55072 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.59□□□□□ -1.83
VCPP55072 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.59□□□□□ -1.83
VCPP55072 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.59□□□□□ -1.83
VCPP55072 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.59□□□□□ -1.83
VCPP55072 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.59□□□□□ -1.83
VCPP55072 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.59□□□□□ -1.83
VCPP55072 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.59□□□□□ -1.83
VCPP55072 RNF138P1-201ENST00000502765 546 ntBASIC3.59□□□□□ -1.83
VCPP55072 AC118282.2-201ENST00000508739 374 ntBASIC3.59□□□□□ -1.83
VCPP55072 AC008837.1-201ENST00000511513 412 ntBASIC3.59□□□□□ -1.83
VCPP55072 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.59□□□□□ -1.83
VCPP55072 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VCPP55072 AC118942.1-201ENST00000529674 1035 ntBASIC3.59□□□□□ -1.83
VCPP55072 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.59□□□□□ -1.83
VCPP55072 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.59□□□□□ -1.83
VCPP55072 AC087897.1-201ENST00000550134 156 ntBASIC3.59□□□□□ -1.83
VCPP55072 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.59□□□□□ -1.83
VCPP55072 AL606834.3-201ENST00000602615 496 ntBASIC3.59□□□□□ -1.83
VCPP55072 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.59□□□□□ -1.83
VCPP55072 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.59□□□□□ -1.83
VCPP55072 SNORA50A-202ENST00000629536 136 ntBASIC3.59□□□□□ -1.83
VCPP55072 MIR7153-201ENST00000637758 57 ntBASIC3.59□□□□□ -1.83
VCPP55072 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VCPP55072 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VCPP55072 AC111188.2-201ENST00000529697 1387 ntBASIC3.59□□□□□ -1.83
VCPP55072 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
VCPP55072 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
VCPP55072 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
VCPP55072 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.59□□□□□ -1.84
VCPP55072 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
VCPP55072 AC118273.1-201ENST00000525324 3006 ntBASIC3.59□□□□□ -1.84
VCPP55072 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.59□□□□□ -1.84
VCPP55072 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
VCPP55072 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.59□□□□□ -1.84
VCPP55072 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.58□□□□□ -1.84
VCPP55072 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
VCPP55072 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
VCPP55072 RNA5SP197-201ENST00000363357 119 ntBASIC3.58□□□□□ -1.84
VCPP55072 RNU6-619P-201ENST00000365146 108 ntBASIC3.58□□□□□ -1.84
VCPP55072 SNORA44-201ENST00000384584 132 ntBASIC3.58□□□□□ -1.84
VCPP55072 MT-TC-201ENST00000387405 66 ntBASIC3.58□□□□□ -1.84
VCPP55072 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms