Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3□□□□□ -1.93
RFX3P48380 AL159169.3-201ENST00000608871 561 ntBASIC3□□□□□ -1.93
RFX3P48380 AL355810.1-201ENST00000614629 552 ntBASIC3□□□□□ -1.93
RFX3P48380 AC068831.7-201ENST00000616954 363 ntBASIC3□□□□□ -1.93
RFX3P48380 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3□□□□□ -1.93
RFX3P48380 AP000943.4-201ENST00000622912 357 ntBASIC3□□□□□ -1.93
RFX3P48380 AC095031.1-201ENST00000623685 672 ntBASIC3□□□□□ -1.93
RFX3P48380 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3□□□□□ -1.93
RFX3P48380 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3□□□□□ -1.93
RFX3P48380 AC073346.2-201ENST00000624724 2058 ntBASIC3□□□□□ -1.93
RFX3P48380 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3□□□□□ -1.93
RFX3P48380 AL079305.1-201ENST00000623159 3008 ntBASIC3□□□□□ -1.93
RFX3P48380 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3□□□□□ -1.93
RFX3P48380 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3□□□□□ -1.93
RFX3P48380 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3□□□□□ -1.93
RFX3P48380 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC2.99□□□□□ -1.93
RFX3P48380 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
RFX3P48380 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.99□□□□□ -1.93
RFX3P48380 DBF4P1-201ENST00000412976 1892 ntBASIC2.99□□□□□ -1.93
RFX3P48380 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
RFX3P48380 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
RFX3P48380 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
RFX3P48380 OR5H2-201ENST00000355273 945 ntBASIC2.99□□□□□ -1.93
RFX3P48380 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.99□□□□□ -1.93
RFX3P48380 RNU6-582P-201ENST00000362989 107 ntBASIC2.99□□□□□ -1.93
RFX3P48380 RNU6-115P-201ENST00000364310 107 ntBASIC2.99□□□□□ -1.93
RFX3P48380 Y_RNA.333-201ENST00000365274 102 ntBASIC2.99□□□□□ -1.93
RFX3P48380 AL139098.1-201ENST00000407291 389 ntBASIC2.99□□□□□ -1.93
RFX3P48380 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.99□□□□□ -1.93
RFX3P48380 STAT4-203ENST00000409995 709 ntTSL 5 BASIC2.99□□□□□ -1.93
RFX3P48380 AC092447.6-201ENST00000414578 210 ntBASIC2.99□□□□□ -1.93
RFX3P48380 FCF1P2-201ENST00000415284 583 ntBASIC2.99□□□□□ -1.93
RFX3P48380 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
RFX3P48380 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC2.99□□□□□ -1.93
RFX3P48380 SFR1P2-201ENST00000421841 730 ntBASIC2.99□□□□□ -1.93
RFX3P48380 AC005345.1-201ENST00000431868 217 ntBASIC2.99□□□□□ -1.93
RFX3P48380 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC2.99□□□□□ -1.93
RFX3P48380 BTF3P5-201ENST00000457252 467 ntBASIC2.99□□□□□ -1.93
RFX3P48380 MTCO3P2-201ENST00000457365 171 ntBASIC2.99□□□□□ -1.93
RFX3P48380 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.99□□□□□ -1.93
RFX3P48380 AC093278.1-201ENST00000494700 600 ntBASIC2.99□□□□□ -1.93
RFX3P48380 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC2.99□□□□□ -1.93
RFX3P48380 AC105914.1-201ENST00000511798 226 ntBASIC2.99□□□□□ -1.93
RFX3P48380 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC2.99□□□□□ -1.93
RFX3P48380 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.99□□□□□ -1.93
RFX3P48380 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.99□□□□□ -1.93
RFX3P48380 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.99□□□□□ -1.93
RFX3P48380 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC2.99□□□□□ -1.93
RFX3P48380 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC2.99□□□□□ -1.93
RFX3P48380 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.99□□□□□ -1.93
RFX3P48380 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.99□□□□□ -1.93
RFX3P48380 COX6CP3-201ENST00000580869 223 ntBASIC2.99□□□□□ -1.93
RFX3P48380 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.99□□□□□ -1.93
RFX3P48380 MIR7975-201ENST00000619350 68 ntBASIC2.99□□□□□ -1.93
RFX3P48380 AC009318.4-201ENST00000620496 486 ntBASIC2.99□□□□□ -1.93
RFX3P48380 AL360181.4-201ENST00000621752 134 ntBASIC2.99□□□□□ -1.93
RFX3P48380 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC2.99□□□□□ -1.93
RFX3P48380 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
RFX3P48380 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
RFX3P48380 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
RFX3P48380 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
RFX3P48380 AC110774.1-201ENST00000623567 2018 ntBASIC2.98□□□□□ -1.93
RFX3P48380 RNA5SP387-201ENST00000364226 106 ntBASIC2.98□□□□□ -1.93
RFX3P48380 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
RFX3P48380 U3.29-201ENST00000391296 212 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AL355615.1-201ENST00000406187 641 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AL354719.1-201ENST00000406535 843 ntBASIC2.98□□□□□ -1.93
RFX3P48380 RNU6-575P-201ENST00000411326 105 ntBASIC2.98□□□□□ -1.93
RFX3P48380 TAF13P2-201ENST00000416876 286 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.98□□□□□ -1.93
RFX3P48380 AC091862.1-201ENST00000438016 1100 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.98□□□□□ -1.93
RFX3P48380 AC000041.1-201ENST00000439655 175 ntBASIC2.98□□□□□ -1.93
RFX3P48380 RPL23AP16-201ENST00000441715 421 ntBASIC2.98□□□□□ -1.93
RFX3P48380 ATP5C1P1-201ENST00000441945 895 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.98□□□□□ -1.93
RFX3P48380 RPS20P24-201ENST00000457473 361 ntBASIC2.98□□□□□ -1.93
RFX3P48380 RPS23P3-201ENST00000470993 430 ntBASIC2.98□□□□□ -1.93
RFX3P48380 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.98□□□□□ -1.93
RFX3P48380 RN7SL283P-201ENST00000489055 303 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AL358832.1-201ENST00000497800 389 ntBASIC2.98□□□□□ -1.93
RFX3P48380 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.98□□□□□ -1.93
RFX3P48380 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.98□□□□□ -1.93
RFX3P48380 AC084024.2-201ENST00000503480 791 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AC098799.1-201ENST00000504752 800 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC2.98□□□□□ -1.93
RFX3P48380 AC074250.1-201ENST00000511117 192 ntBASIC2.98□□□□□ -1.93
RFX3P48380 RNU1-143P-201ENST00000516296 146 ntBASIC2.98□□□□□ -1.93
RFX3P48380 SNORA31.8-201ENST00000516327 108 ntBASIC2.98□□□□□ -1.93
RFX3P48380 RNU6-885P-201ENST00000516607 104 ntBASIC2.98□□□□□ -1.93
RFX3P48380 ZNF705CP-201ENST00000530515 889 ntBASIC2.98□□□□□ -1.93
RFX3P48380 OR4P1P-201ENST00000530808 1136 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AC006518.2-201ENST00000542513 940 ntBASIC2.98□□□□□ -1.93
RFX3P48380 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC2.98□□□□□ -1.93
RFX3P48380 AC002487.1-201ENST00000604565 994 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AL451074.6-201ENST00000608512 729 ntBASIC2.98□□□□□ -1.93
RFX3P48380 U1.23-201ENST00000610293 146 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AC096577.2-201ENST00000611455 153 ntBASIC2.98□□□□□ -1.93
RFX3P48380 RNU1-68P-201ENST00000615382 146 ntBASIC2.98□□□□□ -1.93
RFX3P48380 AC018926.1-201ENST00000616335 435 ntBASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms