Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 RNU6-920P-201ENST00000410926 92 ntBASIC3.7□□□□□ -1.82
MSH3P20585 CYCSP19-201ENST00000411715 316 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AL133384.1-201ENST00000412744 351 ntBASIC3.7□□□□□ -1.82
MSH3P20585 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 AC096632.1-201ENST00000427395 310 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.7□□□□□ -1.82
MSH3P20585 MTND1P20-201ENST00000430341 950 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 KCTD10P1-201ENST00000434203 625 ntBASIC3.7□□□□□ -1.82
MSH3P20585 MTCYBP39-201ENST00000437562 491 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH3P20585 VN1R10P-201ENST00000447106 875 ntBASIC3.7□□□□□ -1.82
MSH3P20585 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
MSH3P20585 BX276092.4-201ENST00000452056 248 ntBASIC3.7□□□□□ -1.82
MSH3P20585 NANOGP10-201ENST00000453325 895 ntBASIC3.7□□□□□ -1.82
MSH3P20585 RPL31P3-201ENST00000458430 332 ntBASIC3.7□□□□□ -1.82
MSH3P20585 SNORD108-201ENST00000459332 71 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AL133162.1-201ENST00000463228 453 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AC092757.1-201ENST00000467293 467 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.7□□□□□ -1.82
MSH3P20585 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 RN7SKP83-201ENST00000516512 178 ntBASIC3.7□□□□□ -1.82
MSH3P20585 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
MSH3P20585 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 DEFB131D-201ENST00000526803 184 ntBASIC3.7□□□□□ -1.82
MSH3P20585 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.7□□□□□ -1.82
MSH3P20585 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.7□□□□□ -1.82
MSH3P20585 AL121766.1-201ENST00000547436 487 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.7□□□□□ -1.82
MSH3P20585 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.7□□□□□ -1.82
MSH3P20585 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 AC099489.2-201ENST00000574976 260 ntBASIC3.7□□□□□ -1.82
MSH3P20585 MIR5187-201ENST00000583479 76 ntBASIC3.7□□□□□ -1.82
MSH3P20585 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC3.7□□□□□ -1.82
MSH3P20585 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH3P20585 AC243773.3-201ENST00000613270 256 ntBASIC3.7□□□□□ -1.82
MSH3P20585 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH3P20585 AC079684.1-201ENST00000621405 437 ntBASIC3.7□□□□□ -1.82
MSH3P20585 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
MSH3P20585 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
MSH3P20585 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.7□□□□□ -1.82
MSH3P20585 DCAF13P1-201ENST00000495256 1330 ntBASIC3.7□□□□□ -1.82
MSH3P20585 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 CR381670.1-201ENST00000624291 1693 ntBASIC3.69□□□□□ -1.82
MSH3P20585 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
MSH3P20585 AL021368.2-201ENST00000606125 5352 ntBASIC3.69□□□□□ -1.82
MSH3P20585 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 Y_RNA.18-201ENST00000362461 102 ntBASIC3.69□□□□□ -1.82
MSH3P20585 MIR554-201ENST00000384874 96 ntBASIC3.69□□□□□ -1.82
MSH3P20585 SNRPEP2-201ENST00000397592 279 ntBASIC3.69□□□□□ -1.82
MSH3P20585 RNU6ATAC-201ENST00000408749 126 ntBASIC3.69□□□□□ -1.82
MSH3P20585 RPS15AP38-201ENST00000413110 372 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC016907.1-201ENST00000419483 435 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.69□□□□□ -1.82
MSH3P20585 AL953862.1-201ENST00000423016 168 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH3P20585 AC098826.1-201ENST00000433943 471 ntBASIC3.69□□□□□ -1.82
MSH3P20585 SKP1P1-201ENST00000438081 489 ntBASIC3.69□□□□□ -1.82
MSH3P20585 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.69□□□□□ -1.82
MSH3P20585 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH3P20585 RPL39P6-201ENST00000448289 150 ntBASIC3.69□□□□□ -1.82
MSH3P20585 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.69□□□□□ -1.82
MSH3P20585 SETP11-201ENST00000473027 690 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC072039.1-201ENST00000477611 581 ntBASIC3.69□□□□□ -1.82
MSH3P20585 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH3P20585 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 HMGN1P11-201ENST00000508668 303 ntBASIC3.69□□□□□ -1.82
MSH3P20585 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.69□□□□□ -1.82
MSH3P20585 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
MSH3P20585 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.69□□□□□ -1.82
MSH3P20585 AC104057.1-201ENST00000515547 497 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH3P20585 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
MSH3P20585 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH3P20585 ZNF705CP-201ENST00000530515 889 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH3P20585 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.69□□□□□ -1.82
MSH3P20585 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH3P20585 LSM6P2-201ENST00000552208 177 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.69□□□□□ -1.82
MSH3P20585 CYCSP2-201ENST00000558168 301 ntBASIC3.69□□□□□ -1.82
MSH3P20585 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.69□□□□□ -1.82
MSH3P20585 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH3P20585 NBR2-204ENST00000587322 63 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AL590229.1-201ENST00000603497 542 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AL596327.1-201ENST00000603629 213 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.69□□□□□ -1.82
MSH3P20585 AC103710.3-201ENST00000608157 948 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AL391497.1-201ENST00000608671 547 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC012531.5-201ENST00000611375 151 ntBASIC3.69□□□□□ -1.82
MSH3P20585 AC068722.2-201ENST00000618734 544 ntBASIC3.69□□□□□ -1.82
MSH3P20585 RBM12B-AS1-201ENST00000623283 653 ntBASIC3.69□□□□□ -1.82
MSH3P20585 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.69□□□□□ -1.82
MSH3P20585 AC099063.3-201ENST00000642066 185 ntBASIC3.69□□□□□ -1.82
MSH3P20585 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms