Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC3.15□□□□□ -1.91
SDC1P18827 AC092593.2-201ENST00000513866 913 ntBASIC3.15□□□□□ -1.91
SDC1P18827 RNU2-58P-201ENST00000516403 183 ntBASIC3.15□□□□□ -1.91
SDC1P18827 RNU1-45P-201ENST00000517191 141 ntBASIC3.15□□□□□ -1.91
SDC1P18827 AC026403.1-201ENST00000518938 295 ntBASIC3.15□□□□□ -1.91
SDC1P18827 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC1P18827 HIGD1AP10-201ENST00000527837 282 ntBASIC3.15□□□□□ -1.91
SDC1P18827 MTCYBP41-201ENST00000528913 1123 ntBASIC3.15□□□□□ -1.91
SDC1P18827 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC1P18827 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC1P18827 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC1P18827 HIGD1AP17-201ENST00000554576 276 ntBASIC3.15□□□□□ -1.91
SDC1P18827 ZNF192P1-203ENST00000565888 810 ntBASIC3.15□□□□□ -1.91
SDC1P18827 AC006329.2-201ENST00000611491 394 ntBASIC3.15□□□□□ -1.91
SDC1P18827 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.91
SDC1P18827 MIR8058-201ENST00000615737 89 ntBASIC3.15□□□□□ -1.91
SDC1P18827 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC1P18827 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.15□□□□□ -1.91
SDC1P18827 AC040168.1-201ENST00000623594 991 ntBASIC3.15□□□□□ -1.91
SDC1P18827 CYP3A51P-201ENST00000633513 256 ntBASIC3.15□□□□□ -1.91
SDC1P18827 MTND2P41-201ENST00000637599 773 ntBASIC3.15□□□□□ -1.91
SDC1P18827 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC3.15□□□□□ -1.91
SDC1P18827 AC092326.2-201ENST00000624772 1561 ntBASIC3.15□□□□□ -1.91
SDC1P18827 NUP58P1-201ENST00000502546 1738 ntBASIC3.15□□□□□ -1.91
SDC1P18827 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SDC1P18827 GDI2P1-201ENST00000429312 1336 ntBASIC3.15□□□□□ -1.91
SDC1P18827 AL161912.2-201ENST00000565707 3007 ntBASIC3.14□□□□□ -1.91
SDC1P18827 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC1P18827 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC1P18827 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SDC1P18827 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SDC1P18827 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SDC1P18827 AC099786.3-201ENST00000565735 1410 ntBASIC3.14□□□□□ -1.91
SDC1P18827 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
SDC1P18827 RNA5SP119-201ENST00000362715 117 ntBASIC3.14□□□□□ -1.91
SDC1P18827 RNA5SP383-201ENST00000362934 120 ntBASIC3.14□□□□□ -1.91
SDC1P18827 SNORA72.3-201ENST00000365074 132 ntBASIC3.14□□□□□ -1.91
SDC1P18827 RNU6-805P-201ENST00000365643 106 ntBASIC3.14□□□□□ -1.91
SDC1P18827 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC1P18827 RNU6-837P-201ENST00000391056 108 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AL121972.1-201ENST00000402023 252 ntBASIC3.14□□□□□ -1.91
SDC1P18827 HSPE1P26-201ENST00000405341 275 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AL445189.1-201ENST00000405722 338 ntBASIC3.14□□□□□ -1.91
SDC1P18827 RNA5SP293-201ENST00000410527 113 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC1P18827 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC1P18827 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC1P18827 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC1P18827 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC1P18827 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.14□□□□□ -1.91
SDC1P18827 AL606517.1-201ENST00000446914 387 ntBASIC3.14□□□□□ -1.91
SDC1P18827 RPL39P6-201ENST00000448289 150 ntBASIC3.14□□□□□ -1.91
SDC1P18827 RPL26P28-201ENST00000451325 435 ntBASIC3.14□□□□□ -1.91
SDC1P18827 SNRPGP3-201ENST00000469405 227 ntBASIC3.14□□□□□ -1.91
SDC1P18827 MTCO3P35-201ENST00000485582 781 ntBASIC3.14□□□□□ -1.91
SDC1P18827 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.14□□□□□ -1.91
SDC1P18827 HMGB1P28-201ENST00000507778 552 ntBASIC3.14□□□□□ -1.91
SDC1P18827 APOOP4-201ENST00000513530 597 ntBASIC3.14□□□□□ -1.91
SDC1P18827 RN7SKP289-201ENST00000517244 295 ntBASIC3.14□□□□□ -1.91
SDC1P18827 PAICSP4-201ENST00000517543 1253 ntBASIC3.14□□□□□ -1.91
SDC1P18827 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC1P18827 AP004371.1-201ENST00000525240 214 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.14□□□□□ -1.91
SDC1P18827 SLC2A13P1-201ENST00000531560 322 ntBASIC3.14□□□□□ -1.91
SDC1P18827 OR5B10P-201ENST00000532869 642 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.14□□□□□ -1.91
SDC1P18827 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.14□□□□□ -1.91
SDC1P18827 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.14□□□□□ -1.91
SDC1P18827 MIR3922-201ENST00000585192 84 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AL159169.3-201ENST00000608871 561 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AP000240.1-201ENST00000609910 452 ntBASIC3.14□□□□□ -1.91
SDC1P18827 CR392039.5-201ENST00000623201 510 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AC012442.3-202ENST00000636742 206 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AC244258.1-201ENST00000637553 1071 ntBASIC3.14□□□□□ -1.91
SDC1P18827 AL392088.2-201ENST00000637607 285 ntBASIC3.14□□□□□ -1.91
SDC1P18827 U6.101-201ENST00000637707 76 ntBASIC3.14□□□□□ -1.91
SDC1P18827 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SDC1P18827 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SDC1P18827 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
SDC1P18827 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SDC1P18827 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SDC1P18827 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SDC1P18827 AC004972.1-201ENST00000623934 2209 ntBASIC3.13□□□□□ -1.91
SDC1P18827 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SDC1P18827 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SDC1P18827 RNA5SP258-201ENST00000362750 119 ntBASIC3.13□□□□□ -1.91
SDC1P18827 RNU6-560P-201ENST00000364007 108 ntBASIC3.13□□□□□ -1.91
SDC1P18827 SNORA73.2-201ENST00000364946 201 ntBASIC3.13□□□□□ -1.91
SDC1P18827 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
SDC1P18827 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SDC1P18827 MIR218-2-201ENST00000385006 110 ntBASIC3.13□□□□□ -1.91
SDC1P18827 RNU6-821P-201ENST00000390995 107 ntBASIC3.13□□□□□ -1.91
SDC1P18827 EI24P1-201ENST00000416584 867 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AC006960.1-201ENST00000419980 153 ntBASIC3.13□□□□□ -1.91
SDC1P18827 HSFY1P1-201ENST00000423928 1178 ntBASIC3.13□□□□□ -1.91
SDC1P18827 USP9YP11-201ENST00000427537 717 ntBASIC3.13□□□□□ -1.91
SDC1P18827 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.13□□□□□ -1.91
SDC1P18827 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.13□□□□□ -1.91
SDC1P18827 RPL23AP22-201ENST00000437556 453 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms