Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RN7SKP116-201ENST00000516902 319 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 RNA5SP503-201ENST00000517047 117 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AC012400.1-201ENST00000518452 381 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA3O43365 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA3O43365 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.23□□□□□ -1.73
HOXA3O43365 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC4.23□□□□□ -1.73
HOXA3O43365 NCAPGP2-201ENST00000557911 754 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 MIR4424-201ENST00000585257 86 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXA3O43365 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 AL365204.3-201ENST00000612448 685 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 AC093838.1-201ENST00000613014 469 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXA3O43365 TAB3P1-202ENST00000452645 1634 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
HOXA3O43365 LARP1BP1-201ENST00000506036 1359 ntBASIC4.23□□□□□ -1.73
HOXA3O43365 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXA3O43365 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXA3O43365 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
HOXA3O43365 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
HOXA3O43365 SNURFL-201ENST00000309296 343 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 RNU6-989P-201ENST00000362756 107 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 RNA5SP123-201ENST00000363244 119 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 Y_RNA.138-201ENST00000363462 102 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 Y_RNA.387-201ENST00000383918 102 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 RNU6-754P-201ENST00000391166 107 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXA3O43365 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.22□□□□□ -1.73
HOXA3O43365 AC114491.1-201ENST00000416095 246 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AL590609.2-201ENST00000421430 368 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 HSPE1P1-201ENST00000421494 318 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AC236972.2-201ENST00000434979 310 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AC005094.1-201ENST00000440420 368 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 MED28P3-201ENST00000444288 531 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AC012512.1-201ENST00000446594 718 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 RPL36AP13-201ENST00000457490 317 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 HMGB1P25-201ENST00000468402 607 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 RPL23AP11-201ENST00000475260 469 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.22□□□□□ -1.73
HOXA3O43365 FAM206BP-201ENST00000510179 541 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA3O43365 HIGD1AP3-201ENST00000515857 278 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA3O43365 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA3O43365 RPL7P20-201ENST00000520308 745 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 DEFB108D-201ENST00000527787 222 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXA3O43365 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 MIR4703-201ENST00000577728 79 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA3O43365 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.22□□□□□ -1.73
HOXA3O43365 MIR4293-201ENST00000584305 78 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.22□□□□□ -1.73
HOXA3O43365 AC093799.2-201ENST00000610062 578 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 MIR6820-201ENST00000611508 62 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 AC011155.2-201ENST00000623202 216 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AL133216.2-202ENST00000634512 349 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 U6.114-201ENST00000636407 96 ntBASIC4.22□□□□□ -1.73
HOXA3O43365 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
HOXA3O43365 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
HOXA3O43365 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
HOXA3O43365 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.21□□□□□ -1.73
HOXA3O43365 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
HOXA3O43365 AC093849.1-201ENST00000563631 2209 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
HOXA3O43365 RNU6-179P-201ENST00000363350 107 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 SNORA51.8-201ENST00000384234 132 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 RN7SKP159-201ENST00000410657 292 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 OR6C66P-201ENST00000414917 930 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 BTF3L4P3-201ENST00000418879 476 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXA3O43365 GNG5P5-201ENST00000420444 220 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 PSMA2P3-201ENST00000429685 675 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 RPS20P1-201ENST00000434853 354 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC4.21□□□□□ -1.74
HOXA3O43365 NDUFA5P4-201ENST00000436704 385 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 AC073465.2-201ENST00000440938 498 ntBASIC4.21□□□□□ -1.74
HOXA3O43365 RPL21P133-201ENST00000443666 476 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms