Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.1■□□□□ 0.81
CDX2Q99626 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.1■□□□□ 0.81
CDX2Q99626 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.1■□□□□ 0.81
CDX2Q99626 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.1■□□□□ 0.81
CDX2Q99626 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.1■□□□□ 0.81
CDX2Q99626 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.1■□□□□ 0.81
CDX2Q99626 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.1■□□□□ 0.81
CDX2Q99626 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.1■□□□□ 0.81
CDX2Q99626 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.1■□□□□ 0.81
CDX2Q99626 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.1■□□□□ 0.81
CDX2Q99626 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.1■□□□□ 0.81
CDX2Q99626 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX2Q99626 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.1■□□□□ 0.81
CDX2Q99626 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.1■□□□□ 0.81
CDX2Q99626 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CDX2Q99626 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 AC036111.1-201ENST00000533973 1582 ntBASIC20.09■□□□□ 0.81
CDX2Q99626 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.09■□□□□ 0.81
CDX2Q99626 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 AC112482.1-201ENST00000492080 688 ntBASIC20.09■□□□□ 0.81
CDX2Q99626 MIR3917-201ENST00000580971 93 ntBASIC20.09■□□□□ 0.81
CDX2Q99626 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.09■□□□□ 0.81
CDX2Q99626 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.09■□□□□ 0.81
CDX2Q99626 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.09■□□□□ 0.81
CDX2Q99626 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX2Q99626 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
CDX2Q99626 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDX2Q99626 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDX2Q99626 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
CDX2Q99626 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDX2Q99626 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDX2Q99626 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.08■□□□□ 0.81
CDX2Q99626 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDX2Q99626 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDX2Q99626 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDX2Q99626 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.08■□□□□ 0.81
CDX2Q99626 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.08■□□□□ 0.81
CDX2Q99626 AC018712.1-201ENST00000455767 687 ntBASIC20.08■□□□□ 0.81
CDX2Q99626 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.08■□□□□ 0.81
CDX2Q99626 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.08■□□□□ 0.81
CDX2Q99626 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.08■□□□□ 0.81
CDX2Q99626 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.08■□□□□ 0.81
CDX2Q99626 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.08■□□□□ 0.81
CDX2Q99626 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.08■□□□□ 0.81
CDX2Q99626 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.08■□□□□ 0.8
CDX2Q99626 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CDX2Q99626 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.08■□□□□ 0.8
CDX2Q99626 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 GPAT2P1-201ENST00000444924 1672 ntBASIC20.07■□□□□ 0.8
CDX2Q99626 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.07■□□□□ 0.8
CDX2Q99626 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.07■□□□□ 0.8
CDX2Q99626 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.07■□□□□ 0.8
CDX2Q99626 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.07■□□□□ 0.8
CDX2Q99626 MIR3687-2-201ENST00000577708 61 ntBASIC20.07■□□□□ 0.8
CDX2Q99626 AC027601.4-201ENST00000611259 610 ntBASIC20.07■□□□□ 0.8
CDX2Q99626 MIR3687-1-201ENST00000614492 61 ntBASIC20.07■□□□□ 0.8
CDX2Q99626 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.07■□□□□ 0.8
CDX2Q99626 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
CDX2Q99626 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CDX2Q99626 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.07■□□□□ 0.8
CDX2Q99626 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX2Q99626 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CDX2Q99626 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 SCARNA2-201ENST00000458748 420 ntBASIC20.06■□□□□ 0.8
CDX2Q99626 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.06■□□□□ 0.8
CDX2Q99626 SART3-203ENST00000546611 1184 ntBASIC20.06■□□□□ 0.8
CDX2Q99626 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.06■□□□□ 0.8
CDX2Q99626 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.06■□□□□ 0.8
CDX2Q99626 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
CDX2Q99626 AL356488.2-201ENST00000602755 427 ntBASIC20.06■□□□□ 0.8
CDX2Q99626 AC239800.4-201ENST00000603712 296 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms