Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 AL031133.1-201ENST00000406807 723 ntBASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 AL138966.2-201ENST00000621997 464 ntBASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HDDC3Q8N4P3 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 AC104417.2-201ENST00000562989 1793 ntBASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 TSPY5P-201ENST00000426936 936 ntBASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 COX11P1-201ENST00000489116 835 ntBASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 MYC-208ENST00000641036 567 ntBASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HDDC3Q8N4P3 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 AC009947.2-201ENST00000444014 672 ntBASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 YBX1P2-201ENST00000489612 999 ntBASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 PRSS44-201ENST00000515154 1146 ntBASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HDDC3Q8N4P3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 ZNF815P-204ENST00000434898 1737 ntBASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 CD320-202ENST00000537716 1119 ntTSL 2 BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HDDC3Q8N4P3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms