Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 AC006333.2-201ENST00000607957 2099 ntBASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 AL133373.2-201ENST00000623187 2828 ntBASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.37■□□□□ 0.53
PPP4R4Q6NUP7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 AC069152.1-201ENST00000438030 544 ntBASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 AC090164.3-201ENST00000610780 2143 ntBASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 AC133041.1-202ENST00000642053 222 ntBASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PPP4R4Q6NUP7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 AL161938.1-201ENST00000569833 2180 ntBASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 KRT17P1-201ENST00000399211 1546 ntBASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 CYP21A1P-202ENST00000354927 1481 ntBASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 CYP2T3P-201ENST00000601990 817 ntBASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 AL589743.5-201ENST00000616611 1050 ntBASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PPP4R4Q6NUP7 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PPP4R4Q6NUP7 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms