Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.4■□□□□ 0.38
SUMO3P55854 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.4■□□□□ 0.38
SUMO3P55854 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SUMO3P55854 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SUMO3P55854 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SUMO3P55854 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SUMO3P55854 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SUMO3P55854 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.4■□□□□ 0.38
SUMO3P55854 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.4■□□□□ 0.38
SUMO3P55854 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.4■□□□□ 0.38
SUMO3P55854 AL355355.2-201ENST00000442321 338 ntBASIC17.4■□□□□ 0.38
SUMO3P55854 FAM207BP-201ENST00000447172 505 ntBASIC17.4■□□□□ 0.38
SUMO3P55854 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.4■□□□□ 0.38
SUMO3P55854 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.4■□□□□ 0.38
SUMO3P55854 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.4■□□□□ 0.38
SUMO3P55854 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.4■□□□□ 0.38
SUMO3P55854 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.4■□□□□ 0.38
SUMO3P55854 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.4■□□□□ 0.38
SUMO3P55854 AC026471.5-201ENST00000615068 467 ntBASIC17.4■□□□□ 0.38
SUMO3P55854 AC130371.2-201ENST00000619443 611 ntBASIC17.4■□□□□ 0.38
SUMO3P55854 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SUMO3P55854 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
SUMO3P55854 FP475955.4-201ENST00000623131 1990 ntBASIC17.4■□□□□ 0.38
SUMO3P55854 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.4■□□□□ 0.38
SUMO3P55854 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.4■□□□□ 0.38
SUMO3P55854 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SUMO3P55854 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SUMO3P55854 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.4■□□□□ 0.38
SUMO3P55854 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SUMO3P55854 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.39■□□□□ 0.37
SUMO3P55854 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.39■□□□□ 0.37
SUMO3P55854 MESTP1-201ENST00000404287 994 ntBASIC17.39■□□□□ 0.37
SUMO3P55854 AC011506.1-201ENST00000474329 610 ntBASIC17.39■□□□□ 0.37
SUMO3P55854 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.39■□□□□ 0.37
SUMO3P55854 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.39■□□□□ 0.37
SUMO3P55854 AP000692.2-201ENST00000608391 879 ntBASIC17.39■□□□□ 0.37
SUMO3P55854 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
SUMO3P55854 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.39■□□□□ 0.37
SUMO3P55854 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.39■□□□□ 0.37
SUMO3P55854 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SUMO3P55854 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.39■□□□□ 0.37
SUMO3P55854 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SUMO3P55854 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 KRT8P11-201ENST00000409686 1436 ntBASIC17.38■□□□□ 0.37
SUMO3P55854 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.38■□□□□ 0.37
SUMO3P55854 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.38■□□□□ 0.37
SUMO3P55854 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 FEM1AP3-201ENST00000403722 1741 ntBASIC17.38■□□□□ 0.37
SUMO3P55854 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.38■□□□□ 0.37
SUMO3P55854 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.38■□□□□ 0.37
SUMO3P55854 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.38■□□□□ 0.37
SUMO3P55854 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
SUMO3P55854 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.38■□□□□ 0.37
SUMO3P55854 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.38■□□□□ 0.37
SUMO3P55854 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.38■□□□□ 0.37
SUMO3P55854 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.38■□□□□ 0.37
SUMO3P55854 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.38■□□□□ 0.37
SUMO3P55854 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.38■□□□□ 0.37
SUMO3P55854 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SUMO3P55854 IRX1P1-201ENST00000438849 1838 ntBASIC17.37■□□□□ 0.37
SUMO3P55854 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.37■□□□□ 0.37
SUMO3P55854 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.37■□□□□ 0.37
SUMO3P55854 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SUMO3P55854 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.37■□□□□ 0.37
SUMO3P55854 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
SUMO3P55854 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.37■□□□□ 0.37
SUMO3P55854 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
SUMO3P55854 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.37■□□□□ 0.37
SUMO3P55854 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SUMO3P55854 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms