Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BDNFP23560 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.25■□□□□ 0.83
BDNFP23560 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
BDNFP23560 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.25■□□□□ 0.83
BDNFP23560 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.25■□□□□ 0.83
BDNFP23560 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.25■□□□□ 0.83
BDNFP23560 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
BDNFP23560 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
BDNFP23560 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.25■□□□□ 0.83
BDNFP23560 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BDNFP23560 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.25■□□□□ 0.83
BDNFP23560 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BDNFP23560 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BDNFP23560 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BDNFP23560 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.25■□□□□ 0.83
BDNFP23560 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
BDNFP23560 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.24■□□□□ 0.83
BDNFP23560 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.24■□□□□ 0.83
BDNFP23560 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.24■□□□□ 0.83
BDNFP23560 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
BDNFP23560 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.24■□□□□ 0.83
BDNFP23560 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.24■□□□□ 0.83
BDNFP23560 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.24■□□□□ 0.83
BDNFP23560 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.24■□□□□ 0.83
BDNFP23560 RNF165-205ENST00000588679 2904 ntBASIC20.24■□□□□ 0.83
BDNFP23560 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
BDNFP23560 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
BDNFP23560 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.24■□□□□ 0.83
BDNFP23560 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.23■□□□□ 0.83
BDNFP23560 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.23■□□□□ 0.83
BDNFP23560 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
BDNFP23560 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.23■□□□□ 0.83
BDNFP23560 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
BDNFP23560 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 AC005521.1-201ENST00000393351 872 ntBASIC20.23■□□□□ 0.83
BDNFP23560 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 SLC25A3P1-201ENST00000443844 931 ntBASIC20.23■□□□□ 0.83
BDNFP23560 PRSS44-201ENST00000515154 1146 ntBASIC20.23■□□□□ 0.83
BDNFP23560 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
BDNFP23560 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.23■□□□□ 0.83
BDNFP23560 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
BDNFP23560 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.23■□□□□ 0.83
BDNFP23560 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
BDNFP23560 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.23■□□□□ 0.83
BDNFP23560 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BDNFP23560 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.22■□□□□ 0.83
BDNFP23560 Z82202.1-201ENST00000623446 1880 ntBASIC20.22■□□□□ 0.83
BDNFP23560 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
BDNFP23560 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.22■□□□□ 0.83
BDNFP23560 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BDNFP23560 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BDNFP23560 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BDNFP23560 AC113347.1-201ENST00000413321 391 ntBASIC20.22■□□□□ 0.83
BDNFP23560 TSPY23P-201ENST00000440136 739 ntBASIC20.22■□□□□ 0.83
BDNFP23560 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.22■□□□□ 0.83
BDNFP23560 AC128688.1-201ENST00000487626 519 ntBASIC20.22■□□□□ 0.83
BDNFP23560 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.22■□□□□ 0.83
BDNFP23560 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.22■□□□□ 0.83
BDNFP23560 AC116562.4-202ENST00000641738 218 ntBASIC20.22■□□□□ 0.83
BDNFP23560 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BDNFP23560 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.22■□□□□ 0.83
BDNFP23560 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BDNFP23560 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
BDNFP23560 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
BDNFP23560 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
BDNFP23560 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
BDNFP23560 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.21■□□□□ 0.83
BDNFP23560 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
BDNFP23560 SLC25A1P2-201ENST00000430693 912 ntBASIC20.21■□□□□ 0.83
BDNFP23560 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 CCR12P-201ENST00000446203 998 ntBASIC20.21■□□□□ 0.83
BDNFP23560 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
BDNFP23560 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.21■□□□□ 0.83
BDNFP23560 RN7SL850P-201ENST00000579959 291 ntBASIC20.21■□□□□ 0.83
BDNFP23560 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.21■□□□□ 0.83
BDNFP23560 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BDNFP23560 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms