Protein–RNA interactions for Protein: O60287

URB1, Nucleolar pre-ribosomal-associated protein 1, humanhuman

Known RBP Predictions only

Length 2,271 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
URB1O60287 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
URB1O60287 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.11■□□□□ 0.49
URB1O60287 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
URB1O60287 PLK5-205ENST00000642079 1969 ntBASIC18.11■□□□□ 0.49
URB1O60287 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
URB1O60287 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.11■□□□□ 0.49
URB1O60287 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.11■□□□□ 0.49
URB1O60287 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
URB1O60287 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
URB1O60287 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.11■□□□□ 0.49
URB1O60287 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
URB1O60287 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
URB1O60287 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
URB1O60287 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.1■□□□□ 0.49
URB1O60287 NUS1P1-201ENST00000446295 882 ntBASIC18.1■□□□□ 0.49
URB1O60287 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
URB1O60287 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 AL031008.1-201ENST00000619963 541 ntBASIC18.1■□□□□ 0.49
URB1O60287 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.1■□□□□ 0.49
URB1O60287 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
URB1O60287 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
URB1O60287 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.1■□□□□ 0.49
URB1O60287 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
URB1O60287 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
URB1O60287 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
URB1O60287 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.1■□□□□ 0.49
URB1O60287 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
URB1O60287 AC092597.1-201ENST00000487352 616 ntBASIC18.1■□□□□ 0.49
URB1O60287 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.1■□□□□ 0.49
URB1O60287 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.1■□□□□ 0.49
URB1O60287 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.1■□□□□ 0.49
URB1O60287 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
URB1O60287 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
URB1O60287 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
URB1O60287 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.09■□□□□ 0.49
URB1O60287 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
URB1O60287 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.09■□□□□ 0.49
URB1O60287 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC18.09■□□□□ 0.49
URB1O60287 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.09■□□□□ 0.49
URB1O60287 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.09■□□□□ 0.49
URB1O60287 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 BX276092.5-203ENST00000456199 560 ntBASIC18.09■□□□□ 0.49
URB1O60287 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.09■□□□□ 0.49
URB1O60287 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 FP700111.2-201ENST00000619190 1892 ntBASIC18.09■□□□□ 0.49
URB1O60287 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.09■□□□□ 0.49
URB1O60287 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.09■□□□□ 0.49
URB1O60287 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
URB1O60287 TSPY19P-201ENST00000418461 509 ntBASIC18.09■□□□□ 0.49
URB1O60287 TSPY18P-201ENST00000441642 509 ntBASIC18.09■□□□□ 0.49
URB1O60287 AL662844.1-201ENST00000546340 181 ntBASIC18.09■□□□□ 0.49
URB1O60287 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
URB1O60287 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
URB1O60287 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
URB1O60287 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
URB1O60287 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.08■□□□□ 0.49
URB1O60287 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
URB1O60287 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.49
URB1O60287 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
URB1O60287 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
URB1O60287 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.08■□□□□ 0.49
URB1O60287 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
URB1O60287 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
URB1O60287 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
URB1O60287 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
URB1O60287 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
URB1O60287 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
URB1O60287 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
URB1O60287 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
URB1O60287 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
URB1O60287 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.08■□□□□ 0.48
URB1O60287 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.08■□□□□ 0.48
URB1O60287 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.08■□□□□ 0.48
URB1O60287 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.08■□□□□ 0.48
URB1O60287 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
URB1O60287 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
URB1O60287 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
URB1O60287 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
URB1O60287 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.08■□□□□ 0.48
URB1O60287 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms