Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 SNRPEP3-201ENST00000338402 276 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 FRG1CP-201ENST00000358464 769 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RNU6-1181P-201ENST00000384191 106 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AL024474.1-201ENST00000404655 591 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RNU2-71P-201ENST00000411395 189 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RPS3AP25-201ENST00000411660 793 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 ATP5F1P1-201ENST00000433775 569 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 VN1R10P-201ENST00000447106 875 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RPL12P26-201ENST00000452430 487 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RPS24P6-201ENST00000452670 400 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RNU7-170P-201ENST00000459303 61 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RN7SL594P-201ENST00000470590 287 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC023598.1-201ENST00000472521 361 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RPS4XP13-201ENST00000483219 789 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 HMGB1P28-201ENST00000507778 552 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC079395.1-201ENST00000510981 262 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC109635.4-202ENST00000531666 412 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC099489.2-201ENST00000574976 260 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC053481.3-201ENST00000577881 843 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC008739.3-201ENST00000603262 127 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC013244.3-201ENST00000605614 388 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC092354.2-201ENST00000607786 514 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC103710.3-201ENST00000608157 948 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC131235.4-201ENST00000609288 620 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 MIR7851-201ENST00000610611 160 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AL391261.4-201ENST00000616012 481 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC109809.1-201ENST00000619665 545 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC092650.2-201ENST00000619984 902 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AL357559.1-201ENST00000622228 274 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 RPS4XP5-202ENST00000449995 1334 ntBASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.83□□□□□ -1.8
CPSF3Q9UKF6 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 ZNF876P-202ENST00000398732 1485 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AL583834.1-201ENST00000406943 343 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC093578.1-201ENST00000415219 368 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC245052.5-201ENST00000416320 649 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 MRPS18BP2-201ENST00000434310 759 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 OFD1P3Y-201ENST00000453312 783 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 NECAP1P2-201ENST00000455668 727 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 RN7SL293P-201ENST00000481765 281 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 RPL7P47-201ENST00000497299 556 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 SETP14-201ENST00000497538 873 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC108078.3-201ENST00000502633 489 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC116353.3-201ENST00000511215 249 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 OR5AP1P-201ENST00000529730 940 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 SLC2A13P1-201ENST00000531560 322 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AL121576.1-201ENST00000556055 276 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 BNIP3P38-201ENST00000601117 544 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC234772.3-201ENST00000602277 528 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC069304.2-201ENST00000605154 435 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC124312.4-201ENST00000605533 310 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 MIR92B-201ENST00000607575 96 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AL590282.1-201ENST00000610379 1136 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC116618.1-201ENST00000634617 774 ntBASIC3.82□□□□□ -1.8
CPSF3Q9UKF6 AC244205.2-202ENST00000635781 342 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 173.1 ms