Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 RNU5D-1-201ENST00000363299 116 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 Y_RNA.472-201ENST00000384322 102 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 PTMAP5-201ENST00000393073 333 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 HMGN1P24-201ENST00000412282 298 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC063979.1-201ENST00000415539 377 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL356968.1-201ENST00000416622 474 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL158156.1-201ENST00000422509 473 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL365396.1-201ENST00000430854 671 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 MTCYBP11-201ENST00000447254 1109 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 EXOSC3P1-201ENST00000448649 500 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 RFC5P1-201ENST00000454419 874 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 snoU13.24-201ENST00000458998 104 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 RPL7P47-201ENST00000497299 556 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL358832.1-201ENST00000497800 389 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 RPL23AP55-201ENST00000498163 452 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 HMGB1P22-201ENST00000505315 124 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 RN7SKP244-201ENST00000516513 307 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 RNU6-1073P-201ENST00000517182 106 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 UBE2NP1-201ENST00000545592 458 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC125611.1-201ENST00000549563 229 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 MIR3690-201ENST00000580266 75 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC128687.1-201ENST00000605304 619 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC144521.1-201ENST00000607148 956 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC024933.1-201ENST00000608472 348 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 RNVU1-4-201ENST00000612985 164 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC023158.2-201ENST00000614876 543 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 MIR8058-201ENST00000615737 89 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AL391262.2-201ENST00000622466 494 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC073348.1-201ENST00000623002 331 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC006963.1-201ENST00000624003 1052 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 AC048347.1-201ENST00000624621 427 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 LINC02211-204ENST00000642024 1070 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LHX3Q9UBR4 EXOC5P1-201ENST00000510543 1969 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 MTND4P10-201ENST00000446199 1363 ntBASIC3.36□□□□□ -1.87
LHX3Q9UBR4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 RNU6-216P-201ENST00000363282 104 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 SNORA70.4-201ENST00000365509 134 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 RNA5SP120-201ENST00000410900 112 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 RAD23BP2-201ENST00000416003 1207 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC012065.2-201ENST00000421295 375 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 RPL21P66-201ENST00000426566 466 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 VDAC1P3-201ENST00000434069 851 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AL591503.2-201ENST00000442314 1005 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AL031313.1-201ENST00000448435 256 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 BTF3P5-201ENST00000457252 467 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 SNORA31.20-201ENST00000517111 133 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 OR10V3P-201ENST00000525712 725 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 LARP7P2-201ENST00000575306 125 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC015917.1-201ENST00000579654 510 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 ZNF415P1-201ENST00000582279 1166 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 CCDC58P3-201ENST00000590792 430 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.35□□□□□ -1.87
LHX3Q9UBR4 CKS1BP3-201ENST00000600888 237 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AC007179.3-201ENST00000604976 235 ntBASIC3.35□□□□□ -1.87
LHX3Q9UBR4 AL590282.1-201ENST00000610379 1136 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms