Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RNU6-582P-201ENST00000362989 107 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RNA5SP267-201ENST00000364893 126 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AC234772.1-201ENST00000377927 937 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RNU6-354P-201ENST00000383862 107 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RNU6-610P-201ENST00000384264 107 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RNU6-712P-201ENST00000410558 100 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 FCF1P2-201ENST00000415284 583 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 UBE2D3P2-201ENST00000424409 445 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AC005345.1-201ENST00000431868 217 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 BX510359.1-201ENST00000456973 237 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RPS20P24-201ENST00000457473 361 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RPL32P34-201ENST00000486380 400 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 MTCO2P9-201ENST00000503214 694 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 SNORA74D-201ENST00000516404 141 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 SNORA64.4-201ENST00000516632 81 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 RN7SKP282-201ENST00000516824 299 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AC087272.1-201ENST00000523624 533 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AC006518.2-201ENST00000542513 940 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 TRAV37-201ENST00000553906 342 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 MIR5195-201ENST00000583555 115 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AL512506.1-201ENST00000613918 449 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AL162574.2-201ENST00000614618 657 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AL355810.1-201ENST00000614629 552 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AL356321.1-201ENST00000621360 228 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AL360181.4-201ENST00000621752 134 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 AC040168.1-201ENST00000623594 991 ntBASIC3.12□□□□□ -1.91
KLHL28Q9NXS3 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 RNU4-35P-201ENST00000362588 141 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 SNORD82-201ENST00000365530 70 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC017079.2-201ENST00000416102 485 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 RPS15AP6-201ENST00000420703 385 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AL158156.1-201ENST00000422509 473 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 DUTP6-201ENST00000425573 462 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 ATP5JP1-201ENST00000431631 322 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 ISCA1P2-201ENST00000438679 421 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 HMGB3P11-201ENST00000440127 604 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 Z99127.3-201ENST00000448158 395 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 RN7SL442P-201ENST00000473804 320 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 RPS26P21-201ENST00000475397 348 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC015908.1-201ENST00000478739 476 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC096751.1-202ENST00000502691 1067 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 ARL4AP2-201ENST00000507378 601 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 SNORA31.1-201ENST00000515993 133 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 SNORA31.5-201ENST00000516190 133 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 RNU6-885P-201ENST00000516607 104 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC126177.3-201ENST00000551839 688 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 MIR5186-201ENST00000577504 120 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AL031985.2-201ENST00000600955 480 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AP001330.4-201ENST00000604350 154 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC124312.4-201ENST00000605533 310 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AC073476.4-201ENST00000628409 72 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 AL049780.3-201ENST00000624612 1583 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 DBF4P1-201ENST00000412976 1892 ntBASIC3.11□□□□□ -1.91
KLHL28Q9NXS3 NUP58P1-201ENST00000502546 1738 ntBASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 CR383658.2-201ENST00000547576 1525 ntBASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 SGO1P2-201ENST00000429458 1589 ntBASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 CD24P4-201ENST00000382840 243 ntBASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 RPL22P22-201ENST00000395439 379 ntBASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 STAT4-203ENST00000409995 709 ntTSL 5 BASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 RNU6-575P-201ENST00000411326 105 ntBASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 HSFY4P-201ENST00000415994 1181 ntBASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.1□□□□□ -1.91
KLHL28Q9NXS3 AC099677.1-201ENST00000420575 175 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms