Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 MTND4LP31-201ENST00000514859 294 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RNA5SP315-201ENST00000516340 116 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 Vault.1-201ENST00000516474 102 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RN7SKP21-201ENST00000516503 220 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RNA5SP312-201ENST00000517068 116 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC022861.1-201ENST00000522981 663 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC084824.1-201ENST00000550917 1005 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 GTF2IP22-201ENST00000554443 182 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC107954.1-201ENST00000565906 727 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC136618.2-201ENST00000575091 400 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC110760.3-201ENST00000598794 467 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC091167.4-201ENST00000605079 184 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AL713922.2-201ENST00000619384 716 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 C2orf27A-204ENST00000623058 969 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AL356266.1-201ENST00000623311 483 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC091931.1-201ENST00000623488 728 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC091905.1-201ENST00000624400 311 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC009039.2-201ENST00000624524 529 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC091925.2-201ENST00000625059 256 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC099063.3-201ENST00000642066 185 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 MAPK10-372ENST00000641954 3413 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 Y_RNA.126-201ENST00000363382 111 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 RNU4-40P-201ENST00000364351 143 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 RNA5SP130-201ENST00000364431 114 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 SNORA57.1-201ENST00000391227 145 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 HMGN2P8-201ENST00000391458 268 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AL031679.1-201ENST00000400616 525 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AL031577.2-201ENST00000404133 280 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 RN7SKP33-201ENST00000410942 340 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 MTCYBP39-201ENST00000437562 491 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 AL162151.2-201ENST00000448875 158 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC097262.1-201ENST00000452559 548 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 ZNF114P1-201ENST00000453500 292 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 SETP11-201ENST00000473027 690 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 RPL30P6-201ENST00000475925 342 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 AL132838.2-201ENST00000492041 314 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 RPS27AP13-201ENST00000498403 237 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC117522.2-201ENST00000510049 657 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 MTND1P22-201ENST00000510572 951 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 RNA5SP179-201ENST00000517284 121 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC087276.1-201ENST00000529659 480 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC091515.1-201ENST00000548110 679 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC007954.1-201ENST00000554198 494 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC090877.1-201ENST00000561418 344 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 ROCK1P1-201ENST00000573767 549 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 MIR3160-1-201ENST00000577972 85 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AP005136.1-201ENST00000579765 429 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 MIR4644-201ENST00000579929 84 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 RPL23AP92-201ENST00000603609 255 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 OR2AS2P-201ENST00000606902 342 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 RNU4-89P-201ENST00000607443 133 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AC107214.2-201ENST00000608204 634 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 MTCO1P24-201ENST00000515438 1558 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
NKX3-1Q99801 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.36□□□□□ -1.87
NKX3-1Q99801 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-1Q99801 DDX43P2-201ENST00000604753 1354 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms