Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 FRG1CP-201ENST00000358464 769 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 RNA5SP28-201ENST00000363841 119 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.356-201ENST00000365475 113 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 RNU6-1227P-201ENST00000383981 107 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 RNU6-1207P-201ENST00000384343 107 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 SNORA70.10-201ENST00000384515 134 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.598-201ENST00000410480 95 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC007390.1-201ENST00000415722 356 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 C1DP2-201ENST00000418167 426 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 RPL36AP36-201ENST00000418616 301 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 COX6CP13-201ENST00000428703 226 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 USP9YP9-201ENST00000429406 715 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC007686.1-201ENST00000488511 463 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 NIFKP7-201ENST00000503365 834 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 HMGB1P29-201ENST00000505659 499 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 LRRC34P2-201ENST00000514850 553 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 MTND1P35-201ENST00000526739 508 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC125611.2-201ENST00000551907 647 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 SETP7-201ENST00000552169 453 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC022884.2-201ENST00000578535 580 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 TPMTP1-201ENST00000592307 737 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AL162730.1-201ENST00000605734 292 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC011816.2-201ENST00000607089 556 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC019206.1-201ENST00000621938 425 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 AC099654.2-201ENST00000433031 1980 ntBASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CLIP3Q96DZ5 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 MAPK10-303ENST00000641324 3959 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC008079.2-201ENST00000623543 20396 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 RNA5SP443-201ENST00000363083 132 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 RNU6-97P-201ENST00000363387 104 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 SNORA63-201ENST00000363450 132 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 Y_RNA.326-201ENST00000365176 113 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 RNU6-359P-201ENST00000365466 108 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 SNORA77-201ENST00000408716 125 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 RNU4-55P-201ENST00000410731 137 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 RN7SKP216-201ENST00000411050 312 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 RPS3AP3-201ENST00000411933 242 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 BTF3L4P3-201ENST00000418879 476 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 ARPC3P1-201ENST00000437218 533 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 FAM103A2P-201ENST00000444122 354 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 USP9YP12-201ENST00000450481 570 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC022364.2-201ENST00000457963 554 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC063943.1-201ENST00000465434 453 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC105914.1-201ENST00000511798 226 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AF131216.2-201ENST00000512316 564 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 FAM92A1P1-201ENST00000528023 890 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC137800.2-201ENST00000574375 120 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 MIR4795-201ENST00000584182 89 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AP000942.4-201ENST00000604811 241 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AP001521.2-201ENST00000608772 546 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC008250.2-201ENST00000615261 205 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 SNX18P1Y-201ENST00000616231 511 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC108479.2-201ENST00000617314 601 ntBASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.75□□□□□ -1.65
CLIP3Q96DZ5 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms