Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL645944.1-201ENST00000603857 493 ntBASIC2.2□□□□□ -2.06
CHD9Q3L8U1 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 RNU4-44P-201ENST00000363050 141 ntBASIC2.19□□□□□ -2.06
CHD9Q3L8U1 RN7SKP226-201ENST00000364912 300 ntBASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC092650.2-201ENST00000619984 902 ntBASIC2.19□□□□□ -2.06
CHD9Q3L8U1 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 RNU6-392P-201ENST00000364926 101 ntBASIC2.19□□□□□ -2.06
CHD9Q3L8U1 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC233279.1-201ENST00000455300 423 ntBASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.19□□□□□ -2.06
CHD9Q3L8U1 ARL2BPP2-201ENST00000550907 489 ntBASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC126177.3-201ENST00000551839 688 ntBASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC090229.1-201ENST00000590983 1609 ntBASIC2.19□□□□□ -2.06
CHD9Q3L8U1 AC004520.1-201ENST00000608362 1413 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 RN7SKP44-201ENST00000363602 316 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 HMGB1P11-201ENST00000413899 637 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 AL358453.1-201ENST00000422522 250 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD9Q3L8U1 CR769767.1-201ENST00000436337 346 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.18□□□□□ -2.06
CHD9Q3L8U1 SNORD13-201ENST00000459299 104 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD9Q3L8U1 AL390334.1-201ENST00000556395 450 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 SUB1P3-201ENST00000564581 315 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 MIR3683-201ENST00000580847 82 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.18□□□□□ -2.06
CHD9Q3L8U1 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.18□□□□□ -2.06
CHD9Q3L8U1 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
CHD9Q3L8U1 RPL36AP33-201ENST00000450395 310 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 ASNSP4-201ENST00000511103 447 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 RNU4ATAC15P-201ENST00000516415 126 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.18□□□□□ -2.06
CHD9Q3L8U1 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
CHD9Q3L8U1 MTND4P35-201ENST00000604257 1375 ntBASIC2.18□□□□□ -2.06
CHD9Q3L8U1 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 EI24P1-201ENST00000416584 867 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AC068339.2-201ENST00000534395 618 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AL445669.2-201ENST00000454425 421 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 RPL9P33-201ENST00000484311 566 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 RNA5SP490-201ENST00000517141 136 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AL359198.2-201ENST00000611836 194 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AC091834.1-201ENST00000614543 472 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AC092628.2-201ENST00000622492 339 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 AL160394.1-201ENST00000624765 724 ntBASIC2.17□□□□□ -2.06
CHD9Q3L8U1 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CHD9Q3L8U1 Y_RNA.122-201ENST00000363331 96 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 FGF7P8-201ENST00000402994 292 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 RPS15AP6-201ENST00000420703 385 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 Y_RNA.670-201ENST00000516255 105 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 HIGD1AP10-201ENST00000527837 282 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 RNU1-87P-201ENST00000363727 170 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 FGF7P3-201ENST00000454645 303 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 RPS27P27-201ENST00000498779 255 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 TMEM248P1-201ENST00000510579 951 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AL450489.1-201ENST00000612071 468 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 TVP23BP2-201ENST00000455082 615 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AC020895.1-201ENST00000595362 272 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AL391813.2-201ENST00000609113 322 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 AL353684.1-201ENST00000622677 1120 ntBASIC2.16□□□□□ -2.06
CHD9Q3L8U1 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.06
CHD9Q3L8U1 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC2.15□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms