Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC021269.2-201ENST00000532318 330 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.61□□□□□ -2.15
COL7A1Q02388 AC122134.1-201ENST00000565664 1104 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
COL7A1Q02388 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.61□□□□□ -2.15
COL7A1Q02388 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
COL7A1Q02388 AC107027.3-201ENST00000565095 3473 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 SNORA25.6-201ENST00000364121 118 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 RNU2-68P-201ENST00000410878 191 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC1.6□□□□□ -2.15
COL7A1Q02388 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC1.6□□□□□ -2.15
COL7A1Q02388 AP000857.1-201ENST00000532151 543 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC1.6□□□□□ -2.15
COL7A1Q02388 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC1.6□□□□□ -2.15
COL7A1Q02388 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.6□□□□□ -2.15
COL7A1Q02388 AC004825.2-201ENST00000616634 455 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC1.6□□□□□ -2.15
COL7A1Q02388 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
COL7A1Q02388 Z99496.1-201ENST00000469424 1477 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 RNA5SP383-201ENST00000362934 120 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 RNU4-62P-201ENST00000410125 130 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
COL7A1Q02388 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.6□□□□□ -2.15
COL7A1Q02388 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC1.6□□□□□ -2.15
COL7A1Q02388 RPL7P54-201ENST00000438336 674 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 RPL23AP58-201ENST00000440453 469 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 MRPL50P4-201ENST00000446432 475 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 RPL5P13-201ENST00000462840 709 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 RPS29P11-201ENST00000496507 171 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC1.6□□□□□ -2.15
COL7A1Q02388 AC004925.1-201ENST00000624256 2706 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 AC116158.1-201ENST00000560231 2129 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC1.6□□□□□ -2.15
COL7A1Q02388 RNU1-100P-201ENST00000365255 165 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 MIR583-201ENST00000384846 75 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 MIR181B1-201ENST00000385240 110 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC1.6□□□□□ -2.15
COL7A1Q02388 FABP5P13-201ENST00000452144 328 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 RPL21P134-201ENST00000453468 483 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC1.6□□□□□ -2.15
COL7A1Q02388 MIR4644-201ENST00000579929 84 ntBASIC1.6□□□□□ -2.15
COL7A1Q02388 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
COL7A1Q02388 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
COL7A1Q02388 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC1.59□□□□□ -2.15
COL7A1Q02388 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC1.59□□□□□ -2.15
COL7A1Q02388 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
COL7A1Q02388 LUZP4P1-201ENST00000415420 344 ntBASIC1.59□□□□□ -2.15
COL7A1Q02388 MTATP6P11-201ENST00000428071 670 ntBASIC1.59□□□□□ -2.15
COL7A1Q02388 AC245517.2-201ENST00000442890 346 ntBASIC1.59□□□□□ -2.15
COL7A1Q02388 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC1.59□□□□□ -2.15
COL7A1Q02388 RNU4ATAC15P-201ENST00000516415 126 ntBASIC1.59□□□□□ -2.15
COL7A1Q02388 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC1.59□□□□□ -2.15
COL7A1Q02388 RPS3AP4-201ENST00000555161 764 ntBASIC1.59□□□□□ -2.15
COL7A1Q02388 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC1.59□□□□□ -2.15
COL7A1Q02388 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC1.59□□□□□ -2.15
COL7A1Q02388 AC091046.2-201ENST00000620775 665 ntBASIC1.59□□□□□ -2.15
COL7A1Q02388 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.59□□□□□ -2.16
COL7A1Q02388 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
COL7A1Q02388 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
COL7A1Q02388 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC1.59□□□□□ -2.16
COL7A1Q02388 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
COL7A1Q02388 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC1.59□□□□□ -2.16
COL7A1Q02388 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC1.59□□□□□ -2.16
COL7A1Q02388 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
COL7A1Q02388 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.16
COL7A1Q02388 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
COL7A1Q02388 HMGB1P10-201ENST00000395823 563 ntBASIC1.59□□□□□ -2.16
COL7A1Q02388 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC1.59□□□□□ -2.16
COL7A1Q02388 AC105402.2-201ENST00000438503 358 ntBASIC1.59□□□□□ -2.16
COL7A1Q02388 RPL23AP76-201ENST00000441860 458 ntBASIC1.59□□□□□ -2.16
COL7A1Q02388 AC072039.1-201ENST00000477611 581 ntBASIC1.59□□□□□ -2.16
COL7A1Q02388 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC1.59□□□□□ -2.16
COL7A1Q02388 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.59□□□□□ -2.16
COL7A1Q02388 BMS1P7-201ENST00000602440 1052 ntBASIC1.59□□□□□ -2.16
COL7A1Q02388 MIR1291-201ENST00000627649 87 ntBASIC1.59□□□□□ -2.16
COL7A1Q02388 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.58□□□□□ -2.16
COL7A1Q02388 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL7A1Q02388 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.58□□□□□ -2.16
COL7A1Q02388 AL162578.1-201ENST00000406202 378 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 AC098826.1-201ENST00000433943 471 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 EXTL2P1-201ENST00000446218 416 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 AL118520.1-201ENST00000450770 291 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 AC126182.1-201ENST00000478134 357 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC1.58□□□□□ -2.16
COL7A1Q02388 RNA5SP61-201ENST00000516453 100 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 RFPL1S-203ENST00000539579 330 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC1.58□□□□□ -2.16
COL7A1Q02388 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC1.58□□□□□ -2.16
COL7A1Q02388 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC1.58□□□□□ -2.16
COL7A1Q02388 AP001542.2-201ENST00000593141 364 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 AC005296.1-201ENST00000616145 209 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 AL353684.1-201ENST00000622677 1120 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 AC095038.3-201ENST00000634439 195 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
COL7A1Q02388 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
COL7A1Q02388 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
COL7A1Q02388 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
COL7A1Q02388 RNU1-91P-201ENST00000364746 163 ntBASIC1.58□□□□□ -2.16
COL7A1Q02388 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL7A1Q02388 MIR3074-201ENST00000384885 81 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms