Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC073968.1-201ENST00000618594 637 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 AC080188.3-201ENST00000624842 748 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.1□□□□□ -1.91
PKNOX1P55347 AC093908.1-201ENST00000623125 8092 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
PKNOX1P55347 AL136164.4-201ENST00000625013 2135 ntBASIC3.1□□□□□ -1.91
PKNOX1P55347 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
PKNOX1P55347 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC008264.2-201ENST00000610193 3731 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PKNOX1P55347 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
PKNOX1P55347 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PKNOX1P55347 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
PKNOX1P55347 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
PKNOX1P55347 TMSB4XP8-201ENST00000402089 135 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.09□□□□□ -1.91
PKNOX1P55347 BX323014.1-201ENST00000412876 237 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 TMSB4XP6-201ENST00000415187 135 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.09□□□□□ -1.91
PKNOX1P55347 RPL36AP36-201ENST00000418616 301 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 USP9YP21-201ENST00000420603 432 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.09□□□□□ -1.91
PKNOX1P55347 TMSB4XP1-201ENST00000424567 135 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.09□□□□□ -1.91
PKNOX1P55347 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC244505.4-201ENST00000434905 287 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC005019.1-201ENST00000436455 431 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 PTGES3P1-201ENST00000439531 483 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 SSXP5-201ENST00000443473 287 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 snoU13.24-201ENST00000458998 104 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AL049829.1-201ENST00000465411 156 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC069306.1-201ENST00000507006 843 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC008837.1-201ENST00000511513 412 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC104417.1-201ENST00000523974 751 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.09□□□□□ -1.91
PKNOX1P55347 MTCO3P15-201ENST00000526563 574 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.09□□□□□ -1.91
PKNOX1P55347 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.09□□□□□ -1.91
PKNOX1P55347 MIR4474-201ENST00000579189 78 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC006130.2-201ENST00000586202 326 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC009318.4-201ENST00000620496 486 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AP002371.2-201ENST00000624450 503 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AL512506.2-201ENST00000624472 458 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC026634.1-201ENST00000634369 198 ntBASIC3.09□□□□□ -1.91
PKNOX1P55347 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.09□□□□□ -1.91
PKNOX1P55347 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.09□□□□□ -1.91
PKNOX1P55347 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
PKNOX1P55347 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
PKNOX1P55347 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.09□□□□□ -1.92
PKNOX1P55347 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
PKNOX1P55347 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
PKNOX1P55347 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.08□□□□□ -1.92
PKNOX1P55347 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
PKNOX1P55347 MTND5P19-201ENST00000424872 1794 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.08□□□□□ -1.92
PKNOX1P55347 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
PKNOX1P55347 HMGB1P5-201ENST00000255320 642 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 RNA5SP258-201ENST00000362750 119 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 RNVU1-3-201ENST00000364313 161 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 RNU6-707P-201ENST00000364647 95 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
PKNOX1P55347 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.08□□□□□ -1.92
PKNOX1P55347 DYNLT3P1-201ENST00000378574 347 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 AC096533.1-201ENST00000411645 353 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.08□□□□□ -1.92
PKNOX1P55347 AL133384.1-201ENST00000412744 351 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.08□□□□□ -1.92
PKNOX1P55347 NDUFB4P5-201ENST00000415445 361 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 OR1AA1P-201ENST00000419597 916 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 SDCBPP3-201ENST00000419629 891 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 RPL7P46-201ENST00000425129 740 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.08□□□□□ -1.92
PKNOX1P55347 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.08□□□□□ -1.92
PKNOX1P55347 AC091286.1-201ENST00000431233 461 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 AL353705.1-201ENST00000433468 480 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 AL590103.1-201ENST00000434488 307 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 HIGD1AP11-201ENST00000438361 280 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 AC241584.1-201ENST00000438469 1241 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 RPS12P18-201ENST00000442381 270 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 HSPE1P28-201ENST00000443139 211 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.08□□□□□ -1.92
PKNOX1P55347 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.08□□□□□ -1.92
PKNOX1P55347 RN7SL542P-201ENST00000467147 294 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 VPS26AP1-201ENST00000483197 979 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.08□□□□□ -1.92
PKNOX1P55347 POU5F1P7-201ENST00000508759 541 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 C1GALT1P2-201ENST00000510813 1104 ntBASIC3.08□□□□□ -1.92
PKNOX1P55347 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.08□□□□□ -1.92
PKNOX1P55347 SNORA48.10-201ENST00000516965 160 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms