Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RN7SL812P-201ENST00000493791 279 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC106872.3-201ENST00000495104 446 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 RNF138P1-201ENST00000502765 546 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC021678.1-201ENST00000505195 936 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.52□□□□□ -1.85
HOXA1P49639 CDV3-208ENST00000511392 554 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA1P49639 AC024589.1-201ENST00000512207 263 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 FABP5P5-201ENST00000515537 406 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 AP003392.2-201ENST00000527269 208 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.52□□□□□ -1.85
HOXA1P49639 OR6C73P-201ENST00000546432 358 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 MIR4528-201ENST00000577763 90 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 MIR4458-201ENST00000578872 75 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 MIR3934-201ENST00000579806 107 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC3.52□□□□□ -1.85
HOXA1P49639 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA1P49639 AC079089.3-201ENST00000603094 673 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC073091.2-201ENST00000603205 907 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA1P49639 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.52□□□□□ -1.85
HOXA1P49639 AL592295.2-201ENST00000612578 206 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 MIR8058-201ENST00000615737 89 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC138932.5-201ENST00000617759 563 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AC004009.2-201ENST00000623016 728 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 AL603839.4-201ENST00000624658 1005 ntBASIC3.52□□□□□ -1.85
HOXA1P49639 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXA1P49639 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA1P49639 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA1P49639 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 AL359893.1-201ENST00000447628 1580 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXA1P49639 RN7SKP103-201ENST00000363848 320 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 RNU6-744P-201ENST00000365557 107 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 RNU6-533P-201ENST00000384144 107 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 RNU6-1316P-201ENST00000384242 108 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 SNORA40.3-201ENST00000390964 122 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 HMGN2P8-201ENST00000391458 268 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AL590704.1-201ENST00000402856 794 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 RNU2-66P-201ENST00000410650 161 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 HMGN1P14-201ENST00000412459 517 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC007899.1-201ENST00000412776 775 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 SNRPFP1-201ENST00000414761 252 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC007390.1-201ENST00000415722 356 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA1P49639 RBMY1KP-201ENST00000423480 476 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC007742.1-201ENST00000425789 329 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AL732292.1-201ENST00000426692 226 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 RPEP2-201ENST00000432149 701 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA1P49639 ELOCP26-201ENST00000436067 329 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 AL772161.1-201ENST00000439130 476 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 RPL23AP89-201ENST00000439324 255 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 RPL7P36-201ENST00000444633 681 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 RPL23AP43-201ENST00000446445 471 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 USP9YP12-201ENST00000450481 570 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 ABCF2P2-201ENST00000450549 296 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AL590365.1-201ENST00000450788 243 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 TMED11P-201ENST00000479478 690 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 HMGB1P21-201ENST00000502313 581 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC096751.1-202ENST00000502691 1067 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 UBE2CP3-201ENST00000502715 450 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXA1P49639 RNU6-405P-201ENST00000516637 110 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC093331.1-201ENST00000521474 169 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 HSPA8P13-201ENST00000523715 472 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 MTCYBP20-201ENST00000524239 1129 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXA1P49639 AC068587.4-201ENST00000533893 186 ntBASIC3.51□□□□□ -1.85
HOXA1P49639 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXA1P49639 AL161713.1-201ENST00000555538 145 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms