Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
MSX2P35548 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.58□□□□□ -1.68
MSX2P35548 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.58□□□□□ -1.68
MSX2P35548 TPTEP1-208ENST00000636884 213 ntBASIC4.58□□□□□ -1.68
MSX2P35548 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.58□□□□□ -1.68
MSX2P35548 AC008758.3-201ENST00000507003 1829 ntBASIC4.58□□□□□ -1.68
MSX2P35548 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.57□□□□□ -1.68
MSX2P35548 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
MSX2P35548 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
MSX2P35548 MAPK10-303ENST00000641324 3959 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC092125.1-201ENST00000562568 1995 ntBASIC4.57□□□□□ -1.68
MSX2P35548 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX2P35548 HSPA8P18-201ENST00000439846 1928 ntBASIC4.57□□□□□ -1.68
MSX2P35548 RN7SKP104-201ENST00000362605 328 ntBASIC4.57□□□□□ -1.68
MSX2P35548 RNU1-85P-201ENST00000364127 164 ntBASIC4.57□□□□□ -1.68
MSX2P35548 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 RNU6-1293P-201ENST00000384077 107 ntBASIC4.57□□□□□ -1.68
MSX2P35548 Y_RNA.431-201ENST00000384086 102 ntBASIC4.57□□□□□ -1.68
MSX2P35548 MIR143-201ENST00000385300 106 ntBASIC4.57□□□□□ -1.68
MSX2P35548 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 HDGFP1-201ENST00000405943 252 ntBASIC4.57□□□□□ -1.68
MSX2P35548 OR3A2-201ENST00000408891 1076 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 AC009237.10-201ENST00000414112 510 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.57□□□□□ -1.68
MSX2P35548 TBCAP2-201ENST00000416175 326 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX2P35548 AC007283.2-201ENST00000424739 197 ntBASIC4.57□□□□□ -1.68
MSX2P35548 RPL35AP12-201ENST00000425362 338 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.57□□□□□ -1.68
MSX2P35548 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 PRPF38AP2-201ENST00000438179 851 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AL049734.2-201ENST00000441066 616 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX2P35548 AL354714.3-201ENST00000447284 493 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX2P35548 CACYBPP2-201ENST00000453625 678 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX2P35548 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX2P35548 AC026427.2-201ENST00000506228 536 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.57□□□□□ -1.68
MSX2P35548 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 RNU6-327P-201ENST00000516270 127 ntBASIC4.57□□□□□ -1.68
MSX2P35548 RNU6-1045P-201ENST00000516321 107 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 AC090572.1-201ENST00000519251 160 ntBASIC4.57□□□□□ -1.68
MSX2P35548 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 AC022861.1-201ENST00000522981 663 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.57□□□□□ -1.68
MSX2P35548 PSMA3P-201ENST00000555485 635 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AL121821.2-201ENST00000556081 394 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AL049839.1-201ENST00000556151 657 ntBASIC4.57□□□□□ -1.68
MSX2P35548 RPL21P7-201ENST00000557463 483 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX2P35548 AC007687.1-201ENST00000602704 304 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AL589674.2-201ENST00000604304 337 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC104695.2-201ENST00000605056 775 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC087783.2-201ENST00000605070 562 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC121334.2-201ENST00000605387 271 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AL355472.4-201ENST00000610233 626 ntBASIC4.57□□□□□ -1.68
MSX2P35548 uc_338.5-201ENST00000611839 155 ntBASIC4.57□□□□□ -1.68
MSX2P35548 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 MIR6864-201ENST00000617935 70 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC009248.2-201ENST00000619826 254 ntBASIC4.57□□□□□ -1.68
MSX2P35548 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.57□□□□□ -1.68
MSX2P35548 RNU6-156P-201ENST00000621869 107 ntBASIC4.57□□□□□ -1.68
MSX2P35548 RMST_7.1-201ENST00000621935 268 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC019206.1-201ENST00000621938 425 ntBASIC4.57□□□□□ -1.68
MSX2P35548 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.57□□□□□ -1.68
MSX2P35548 LINC01109-201ENST00000603837 3081 ntBASIC4.57□□□□□ -1.68
MSX2P35548 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
MSX2P35548 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX2P35548 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
MSX2P35548 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
MSX2P35548 RNU1-94P-201ENST00000362627 173 ntBASIC4.56□□□□□ -1.68
MSX2P35548 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
MSX2P35548 RNU2-9P-201ENST00000410194 145 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX2P35548 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX2P35548 AL353729.1-201ENST00000425044 720 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.56□□□□□ -1.68
MSX2P35548 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.56□□□□□ -1.68
MSX2P35548 RBMY2QP-201ENST00000429799 1147 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AC024082.2-201ENST00000434771 238 ntBASIC4.56□□□□□ -1.68
MSX2P35548 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4.56□□□□□ -1.68
MSX2P35548 RPL23AP74-201ENST00000437246 471 ntBASIC4.56□□□□□ -1.68
MSX2P35548 BNIP3P2-201ENST00000441221 577 ntBASIC4.56□□□□□ -1.68
MSX2P35548 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms