Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SHMT2P34897 OR4A45P-201ENST00000529954 901 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.12□□□□□ -1.91
SHMT2P34897 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.12□□□□□ -1.91
SHMT2P34897 SNORD39.3-201ENST00000584451 71 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SHMT2P34897 AC006116.7-201ENST00000590141 756 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 AP001542.2-201ENST00000593141 364 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 AL009028.1-201ENST00000604895 802 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 AP002802.2-201ENST00000605877 235 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 AC068722.2-201ENST00000618734 544 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 AC126544.2-201ENST00000625174 749 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.12□□□□□ -1.91
SHMT2P34897 AC093831.2-201ENST00000624393 3427 ntBASIC3.12□□□□□ -1.91
SHMT2P34897 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
SHMT2P34897 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SHMT2P34897 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.12□□□□□ -1.91
SHMT2P34897 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SHMT2P34897 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHMT2P34897 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 AL157700.1-201ENST00000561973 1432 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.11□□□□□ -1.91
SHMT2P34897 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHMT2P34897 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.11□□□□□ -1.91
SHMT2P34897 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 RNU6-236P-201ENST00000363886 106 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 RNA5SP387-201ENST00000364226 106 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.11□□□□□ -1.91
SHMT2P34897 MIR217-201ENST00000384817 110 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
SHMT2P34897 MIR1250-201ENST00000408098 113 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.11□□□□□ -1.91
SHMT2P34897 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.11□□□□□ -1.91
SHMT2P34897 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT2P34897 TRIAP1P1-201ENST00000427062 225 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT2P34897 NEK4P1-201ENST00000433383 879 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT2P34897 RPS3AP12-201ENST00000443616 753 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 NPM1P49-201ENST00000448027 714 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT2P34897 NDUFA5P7-201ENST00000452914 242 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.11□□□□□ -1.91
SHMT2P34897 RN7SL863P-201ENST00000462370 296 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.11□□□□□ -1.91
SHMT2P34897 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.11□□□□□ -1.91
SHMT2P34897 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT2P34897 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT2P34897 OR5H5P-201ENST00000503164 928 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AC069306.1-201ENST00000507006 843 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AC023632.1-201ENST00000518463 375 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AP001207.2-201ENST00000519490 539 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT2P34897 AC087897.1-201ENST00000550134 156 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.11□□□□□ -1.91
SHMT2P34897 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 MIR5004-201ENST00000579078 107 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 MIR2682-201ENST00000580305 110 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AC090616.5-202ENST00000582111 297 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AC010928.3-201ENST00000587712 541 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.11□□□□□ -1.91
SHMT2P34897 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.11□□□□□ -1.91
SHMT2P34897 DNAJC19P3-201ENST00000594491 331 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AC138932.5-201ENST00000617759 563 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 AP003476.1-201ENST00000623984 516 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SHMT2P34897 AC093010.3-201ENST00000570269 15214 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.11□□□□□ -1.91
SHMT2P34897 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
SHMT2P34897 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHMT2P34897 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHMT2P34897 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHMT2P34897 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHMT2P34897 AL136164.4-201ENST00000625013 2135 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 ZNF734P-201ENST00000419494 1534 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
SHMT2P34897 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 OR1S2-201ENST00000302592 978 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 UBE2Q2P1-202ENST00000354771 883 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 Y_RNA.333-201ENST00000365274 102 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 AC096533.1-201ENST00000411645 353 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 AC007899.1-201ENST00000412776 775 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 RPS7P9-201ENST00000414704 586 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 USP9YP21-201ENST00000420603 432 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.1□□□□□ -1.91
SHMT2P34897 AC244098.2-201ENST00000422068 99 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 RPL31P54-201ENST00000429803 370 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 PTGES3P1-201ENST00000439531 483 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.1□□□□□ -1.91
SHMT2P34897 MRPL42P4-201ENST00000453267 443 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 snoU13.3-201ENST00000459441 104 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 RN7SL283P-201ENST00000489055 303 ntBASIC3.1□□□□□ -1.91
SHMT2P34897 AC118282.1-201ENST00000506408 765 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms