Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC004067.1-201ENST00000608733 700 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AL590282.1-201ENST00000610379 1136 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 BX664608.1-201ENST00000610519 487 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 AL008636.1-201ENST00000625038 1018 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD3P31249 AC092447.10-201ENST00000620607 1652 ntBASIC3.64□□□□□ -1.83
HOXD3P31249 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC3.64□□□□□ -1.83
HOXD3P31249 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD3P31249 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD3P31249 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD3P31249 AL445487.1-201ENST00000415694 1580 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD3P31249 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD3P31249 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD3P31249 AL359922.3-201ENST00000624779 1670 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD3P31249 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 RNA5SP447-201ENST00000363749 119 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 RNVU1-3-201ENST00000364313 161 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 Y_RNA.381-201ENST00000365666 102 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 RNU6-483P-201ENST00000384088 108 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 RNU6-1103P-201ENST00000384150 107 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HOXD3P31249 RPL23AP32-201ENST00000395315 459 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 MRPL42P2-201ENST00000403169 426 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 U3.35-201ENST00000408405 208 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 RN7SKP267-201ENST00000410381 285 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 RNU2-15P-201ENST00000410692 191 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 CCDC58P2-201ENST00000417131 366 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 CYCSP10-201ENST00000417973 294 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AL353193.1-201ENST00000421444 268 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 AL645608.4-201ENST00000423619 154 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 MTCO2P19-201ENST00000427513 598 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 RPL23AP1-201ENST00000428990 471 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 AC000111.3-201ENST00000433478 193 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 AC004938.1-201ENST00000438468 308 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 AL049734.2-201ENST00000441066 616 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 H2AFZP5-201ENST00000446960 382 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC079168.2-201ENST00000453977 416 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AL359385.1-201ENST00000456509 365 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 RPS4XP10-201ENST00000465034 731 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC090686.1-201ENST00000481577 749 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 CREM-238ENST00000488741 651 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 AC010587.1-201ENST00000505809 469 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 AC093840.1-201ENST00000511599 336 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC074344.1-201ENST00000512823 224 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 RNA5SP360-201ENST00000516555 118 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 AL121579.1-201ENST00000555129 305 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC087477.6-201ENST00000559595 843 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AL845331.3-202ENST00000562856 261 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 HMGB1P33-201ENST00000563485 527 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC099489.2-201ENST00000574976 260 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC060771.1-201ENST00000582031 164 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 AC115621.1-201ENST00000604653 858 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AL590392.1-201ENST00000604960 446 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 AC104458.1-201ENST00000608243 463 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 AC015914.2-201ENST00000618167 288 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC3.63□□□□□ -1.83
HOXD3P31249 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD3P31249 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD3P31249 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXD3P31249 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD3P31249 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXD3P31249 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HOXD3P31249 AL359893.1-201ENST00000447628 1580 ntBASIC3.63□□□□□ -1.83
HOXD3P31249 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXD3P31249 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXD3P31249 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HOXD3P31249 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms