Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
LIG1P18858 AC092162.3-201ENST00000624511 1624 ntBASIC5.74□□□□□ -1.49
LIG1P18858 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG1P18858 AC105074.1-201ENST00000623380 3095 ntBASIC5.74□□□□□ -1.49
LIG1P18858 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG1P18858 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.74□□□□□ -1.49
LIG1P18858 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG1P18858 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
LIG1P18858 SNORA17.1-201ENST00000362945 126 ntBASIC5.74□□□□□ -1.49
LIG1P18858 SNORA4.3-201ENST00000365564 137 ntBASIC5.74□□□□□ -1.49
LIG1P18858 SNORD42.2-201ENST00000365570 69 ntBASIC5.74□□□□□ -1.49
LIG1P18858 MIR559-201ENST00000385188 96 ntBASIC5.74□□□□□ -1.49
LIG1P18858 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.74□□□□□ -1.49
LIG1P18858 LYPLA1P1-201ENST00000434514 622 ntBASIC5.74□□□□□ -1.49
LIG1P18858 AL049734.2-201ENST00000441066 616 ntBASIC5.74□□□□□ -1.49
LIG1P18858 HMGB3P21-201ENST00000452483 547 ntBASIC5.74□□□□□ -1.49
LIG1P18858 snoU13.20-201ENST00000459180 104 ntBASIC5.74□□□□□ -1.49
LIG1P18858 AC233702.1-201ENST00000482905 502 ntBASIC5.74□□□□□ -1.49
LIG1P18858 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.74□□□□□ -1.49
LIG1P18858 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG1P18858 RN7SKP66-201ENST00000516681 231 ntBASIC5.74□□□□□ -1.49
LIG1P18858 RN7SKP96-201ENST00000516948 297 ntBASIC5.74□□□□□ -1.49
LIG1P18858 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 CYCSP28-201ENST00000534284 321 ntBASIC5.74□□□□□ -1.49
LIG1P18858 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.74□□□□□ -1.49
LIG1P18858 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.74□□□□□ -1.49
LIG1P18858 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
LIG1P18858 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG1P18858 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
LIG1P18858 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
LIG1P18858 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG1P18858 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG1P18858 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
LIG1P18858 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
LIG1P18858 MAPK10-349ENST00000641767 3661 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.73□□□□□ -1.49
LIG1P18858 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.73□□□□□ -1.49
LIG1P18858 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.73□□□□□ -1.49
LIG1P18858 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG1P18858 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.73□□□□□ -1.49
LIG1P18858 AL672167.1-205ENST00000641112 3080 ntBASIC5.73□□□□□ -1.49
LIG1P18858 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
LIG1P18858 RNU1-85P-201ENST00000364127 164 ntBASIC5.73□□□□□ -1.49
LIG1P18858 SNORA51.6-201ENST00000384151 125 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AL078599.1-201ENST00000402075 293 ntBASIC5.73□□□□□ -1.49
LIG1P18858 RN7SKP213-201ENST00000410746 298 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC127526.1-201ENST00000417526 366 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AL645937.1-202ENST00000421799 937 ntBASIC5.73□□□□□ -1.49
LIG1P18858 MTCYBP8-201ENST00000422855 651 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.73□□□□□ -1.49
LIG1P18858 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG1P18858 RPL37P1-201ENST00000432310 284 ntBASIC5.73□□□□□ -1.49
LIG1P18858 RPL23AP30-201ENST00000432419 501 ntBASIC5.73□□□□□ -1.49
LIG1P18858 PPIAP13-201ENST00000434706 478 ntBASIC5.73□□□□□ -1.49
LIG1P18858 DDX3P2-201ENST00000446138 111 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC079781.2-201ENST00000446424 169 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
LIG1P18858 AC104651.2-201ENST00000447549 528 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AL162388.1-201ENST00000450912 352 ntBASIC5.73□□□□□ -1.49
LIG1P18858 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.73□□□□□ -1.49
LIG1P18858 AC092647.2-201ENST00000452998 253 ntBASIC5.73□□□□□ -1.49
LIG1P18858 HMGN2P26-201ENST00000463169 339 ntBASIC5.73□□□□□ -1.49
LIG1P18858 RN7SL443P-201ENST00000464331 290 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC5.73□□□□□ -1.49
LIG1P18858 RPL32P9-201ENST00000487963 407 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC011005.3-201ENST00000491624 395 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.73□□□□□ -1.49
LIG1P18858 KLHL2P1-201ENST00000508691 521 ntBASIC5.73□□□□□ -1.49
LIG1P18858 NPM1P41-201ENST00000512920 831 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.73□□□□□ -1.49
LIG1P18858 SNORD116-26-201ENST00000516006 96 ntBASIC5.73□□□□□ -1.49
LIG1P18858 RNA5SP249-201ENST00000516127 99 ntBASIC5.73□□□□□ -1.49
LIG1P18858 RNU6-1220P-201ENST00000517126 108 ntBASIC5.73□□□□□ -1.49
LIG1P18858 ZNF705CP-201ENST00000530515 889 ntBASIC5.73□□□□□ -1.49
LIG1P18858 BNIP3P6-201ENST00000549284 499 ntBASIC5.73□□□□□ -1.49
LIG1P18858 SCOCP1-201ENST00000554676 349 ntBASIC5.73□□□□□ -1.49
LIG1P18858 OR4T1P-201ENST00000554933 911 ntBASIC5.73□□□□□ -1.49
LIG1P18858 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
LIG1P18858 AL356432.3-201ENST00000568952 465 ntBASIC5.73□□□□□ -1.49
LIG1P18858 CYCSP40-201ENST00000575927 294 ntBASIC5.73□□□□□ -1.49
LIG1P18858 MIR4512-201ENST00000583257 77 ntBASIC5.73□□□□□ -1.49
LIG1P18858 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.73□□□□□ -1.49
LIG1P18858 AL391813.2-201ENST00000609113 322 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC090510.2-201ENST00000617465 629 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC099494.2-201ENST00000623371 978 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC138305.3-201ENST00000624988 240 ntBASIC5.73□□□□□ -1.49
LIG1P18858 OR2L1P-202ENST00000641567 1023 ntBASIC5.73□□□□□ -1.49
LIG1P18858 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG1P18858 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG1P18858 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
LIG1P18858 LINC01355-201ENST00000566551 5444 ntBASIC5.73□□□□□ -1.49
LIG1P18858 AC092447.10-201ENST00000620607 1652 ntBASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms