Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MIR5096-201ENST00000583713 70 ntBASIC5.04□□□□□ -1.6
HMGB1P09429 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC5.04□□□□□ -1.6
HMGB1P09429 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGB1P09429 VN1R92P-201ENST00000598511 928 ntBASIC5.04□□□□□ -1.6
HMGB1P09429 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.04□□□□□ -1.6
HMGB1P09429 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGB1P09429 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.04□□□□□ -1.6
HMGB1P09429 AC008013.2-202ENST00000637965 364 ntBASIC5.04□□□□□ -1.6
HMGB1P09429 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HMGB1P09429 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGB1P09429 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGB1P09429 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC5.03□□□□□ -1.6
HMGB1P09429 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HMGB1P09429 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGB1P09429 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGB1P09429 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HMGB1P09429 RNU1-14P-201ENST00000362759 152 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 SNORA23-201ENST00000365128 182 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
HMGB1P09429 RNA5SP252-201ENST00000391131 119 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 RPL37P18-201ENST00000411602 243 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 HIGD1AP15-201ENST00000416198 280 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC5.03□□□□□ -1.6
HMGB1P09429 RPL21P40-201ENST00000428586 483 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 RPL23AP89-201ENST00000439324 255 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 AC009237.8-201ENST00000445492 379 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC5.03□□□□□ -1.6
HMGB1P09429 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.03□□□□□ -1.6
HMGB1P09429 AC084357.1-201ENST00000473404 255 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 RPL32P34-201ENST00000486380 400 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 AC025445.1-201ENST00000502728 300 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 PARP4P3-201ENST00000510265 317 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGB1P09429 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC5.03□□□□□ -1.6
HMGB1P09429 AC013828.2-201ENST00000532487 235 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 ERP27-202ENST00000540097 993 ntTSL 2 BASIC5.03□□□□□ -1.6
HMGB1P09429 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HMGB1P09429 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.03□□□□□ -1.6
HMGB1P09429 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGB1P09429 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGB1P09429 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGB1P09429 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC5.03□□□□□ -1.6
HMGB1P09429 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC5.03□□□□□ -1.6
HMGB1P09429 AC007490.1-201ENST00000624321 703 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 MIR4275-201ENST00000636486 87 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 AL158163.1-201ENST00000603915 1649 ntBASIC5.03□□□□□ -1.6
HMGB1P09429 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
HMGB1P09429 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC5.03□□□□□ -1.6
HMGB1P09429 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
HMGB1P09429 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
HMGB1P09429 ZNF736P9Y-201ENST00000439586 1345 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
HMGB1P09429 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HMGB1P09429 AC068254.2-201ENST00000623938 3577 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HMGB1P09429 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HMGB1P09429 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HMGB1P09429 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC5.02□□□□□ -1.61
HMGB1P09429 RNU6-1200P-201ENST00000384162 107 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 MIR585-201ENST00000384887 94 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HMGB1P09429 AL583835.1-201ENST00000399570 407 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 MIR937-201ENST00000401271 86 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.02□□□□□ -1.61
HMGB1P09429 RNA5SP104-201ENST00000410989 118 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.02□□□□□ -1.61
HMGB1P09429 RSU1P2-202ENST00000437884 485 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC5.02□□□□□ -1.61
HMGB1P09429 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.02□□□□□ -1.61
HMGB1P09429 RAD23BP3-201ENST00000454157 1152 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 AC034236.1-201ENST00000469891 373 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 RN7SL738P-201ENST00000470264 297 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 RN7SL585P-201ENST00000470538 280 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 TAF8-207ENST00000482432 556 ntTSL 2 BASIC5.02□□□□□ -1.61
HMGB1P09429 RN7SL691P-201ENST00000494487 301 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 CEACAMP10-202ENST00000495431 496 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 POU5F1P7-201ENST00000508759 541 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 HSPE1P23-201ENST00000509838 286 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HMGB1P09429 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 IFITM8P-201ENST00000522529 394 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 TRAV8-5-201ENST00000537369 341 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.02□□□□□ -1.61
HMGB1P09429 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.02□□□□□ -1.61
HMGB1P09429 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC5.02□□□□□ -1.61
HMGB1P09429 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC5.02□□□□□ -1.61
HMGB1P09429 AC069240.1-201ENST00000548774 375 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC5.02□□□□□ -1.61
HMGB1P09429 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC5.02□□□□□ -1.61
HMGB1P09429 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.02□□□□□ -1.61
HMGB1P09429 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC5.02□□□□□ -1.61
HMGB1P09429 MIR4330-201ENST00000579077 105 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 AC022022.2-201ENST00000602989 360 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC5.02□□□□□ -1.61
HMGB1P09429 AL445363.3-201ENST00000623080 671 ntBASIC5.02□□□□□ -1.61
HMGB1P09429 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HMGB1P09429 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
HMGB1P09429 TPTE2P4-201ENST00000258589 1605 ntBASIC5.01□□□□□ -1.61
HMGB1P09429 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HMGB1P09429 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms