Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC015871.2-201ENST00000603605 948 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC112191.3-201ENST00000604371 277 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC006566.1-201ENST00000608943 513 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC128687.2-201ENST00000609657 566 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC008498.1-201ENST00000613012 531 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AP000346.3-201ENST00000622821 210 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC116667.1-201ENST00000604855 2072 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC018555.1-201ENST00000567548 1980 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 RNU5A-6P-201ENST00000384136 116 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-533P-201ENST00000384144 107 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-517P-201ENST00000384362 110 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 FCF1P9-201ENST00000412546 282 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 FAR2P2-201ENST00000413041 594 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 COX6B1P7-201ENST00000430845 235 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 RSU1P2-202ENST00000437884 485 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AL590365.1-201ENST00000450788 243 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC011276.1-201ENST00000469688 323 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC007686.1-201ENST00000488511 463 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 MTND2P33-201ENST00000506452 1031 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 TXNP6-201ENST00000510190 310 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 IGLVIV-53-201ENST00000520107 367 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AL359999.1-201ENST00000604513 294 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AL356218.2-201ENST00000605264 187 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC103710.1-201ENST00000610003 901 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC138749.5-201ENST00000611461 208 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC131902.3-201ENST00000611767 581 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC092794.1-201ENST00000612734 582 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AP001506.1-201ENST00000615444 211 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 AC116165.2-201ENST00000616705 206 ntBASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.82□□□□□ -1.64
LIMCH1Q9UPQ0 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-28P-201ENST00000362378 107 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RNA5SP366-201ENST00000365454 123 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 MIR585-201ENST00000384887 94 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 SNORD115.1-201ENST00000391109 76 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 U3.22-201ENST00000391120 215 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RNU4-25P-201ENST00000410569 230 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 UBE2V1P10-201ENST00000414685 269 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 GLRXP1-201ENST00000423261 334 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 BTF3P10-201ENST00000433415 495 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC005297.2-201ENST00000450430 606 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 HMGB1P15-201ENST00000453854 435 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 SBDSP1-204ENST00000453858 737 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RPS29P33-201ENST00000456717 146 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RN7SL303P-201ENST00000469773 251 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC022034.3-201ENST00000471393 478 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RPS29P22-201ENST00000472363 168 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RN7SL481P-201ENST00000477764 299 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RN7SL271P-201ENST00000487601 295 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AP001025.2-201ENST00000490908 477 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC023424.2-201ENST00000493479 777 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC138853.1-201ENST00000503549 823 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RPL37P25-201ENST00000507308 276 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 RNU6-1003P-201ENST00000517099 105 ntBASIC4.81□□□□□ -1.64
LIMCH1Q9UPQ0 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms