Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU6-723P-201ENST00000383973 107 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 U3.29-201ENST00000391296 212 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 RNU4-6P-201ENST00000410804 122 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 RNU6-920P-201ENST00000410926 92 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC090960.1-201ENST00000421072 306 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AL590233.1-201ENST00000430017 456 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 RPL23AP74-201ENST00000437246 471 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 MTND5P14-201ENST00000441481 1267 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 Z83846.1-201ENST00000446798 265 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AL500522.2-201ENST00000448562 343 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 BX322784.1-201ENST00000455793 1077 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 RPL38P1-201ENST00000460914 211 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AP000873.1-201ENST00000463987 400 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AL672167.3-201ENST00000465951 960 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
NKX3-1Q99801 HMGB1P36-201ENST00000487709 576 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 TRBV12-2-201ENST00000489763 344 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 RNU4-60P-201ENST00000517239 135 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC008802.1-201ENST00000519121 791 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 HSPA8P13-201ENST00000523715 472 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC239860.2-201ENST00000525886 270 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 RGS5-218ENST00000526176 574 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC024224.1-201ENST00000538284 609 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 CENPUP2-201ENST00000555897 1186 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC025884.1-201ENST00000556034 378 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 VN1R79P-201ENST00000593540 513 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 Z94722.1-201ENST00000604328 474 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC024941.1-201ENST00000612250 334 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC004009.2-201ENST00000623016 728 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC040168.1-201ENST00000623594 991 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.38□□□□□ -1.87
NKX3-1Q99801 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
NKX3-1Q99801 MTND4P16-201ENST00000466108 1367 ntBASIC3.38□□□□□ -1.87
NKX3-1Q99801 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
NKX3-1Q99801 RNU6-500P-201ENST00000362349 107 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 SNORA60-201ENST00000362396 134 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 Y_RNA.18-201ENST00000362461 102 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RNU6-761P-201ENST00000384148 107 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AL021407.1-201ENST00000404531 386 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 MIR1302-8-201ENST00000408342 128 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RNA5SP317-201ENST00000410176 116 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RNA5SP56-201ENST00000410277 118 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RNA5SP311-201ENST00000411290 116 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RHEBP3-201ENST00000411920 351 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RPL7AP73-201ENST00000413490 353 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC012065.2-201ENST00000421295 375 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC007742.1-201ENST00000425789 329 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 RPL7P2-201ENST00000427639 268 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 MTCYBP45-201ENST00000435243 565 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 ELOCP26-201ENST00000436067 329 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 LARP1BP3-201ENST00000437229 869 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 LSM1P1-201ENST00000438629 273 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 HMGB1P37-201ENST00000439613 609 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 MTCO1P27-201ENST00000448269 226 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC004069.2-201ENST00000505438 1114 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 AC020593.1-201ENST00000507399 299 ntBASIC3.37□□□□□ -1.87
NKX3-1Q99801 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms