Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 DEFB109B-201ENST00000382656 264 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 RNU6-851P-201ENST00000384565 107 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 EIF5P1-201ENST00000400019 1231 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC236972.1-201ENST00000433225 199 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 RPL17P49-201ENST00000443728 411 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 Z77249.1-201ENST00000444622 1175 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC126121.1-201ENST00000482313 553 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC021087.2-201ENST00000504656 1203 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC025881.1-201ENST00000518851 512 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AP003717.3-201ENST00000544832 1180 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC060766.3-201ENST00000591442 263 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 CYCSP41-201ENST00000616920 296 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 AC005858.4-201ENST00000623191 700 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 MAPK10-322ENST00000641485 4530 ntBASIC3.03□□□□□ -1.92
CCDC112Q8NEF3 MTND4P31-201ENST00000425607 1343 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 MTCO3P4-201ENST00000419236 787 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 AC073310.1-201ENST00000423226 1033 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 RPL37P4-201ENST00000448908 268 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 NIPA2P5-201ENST00000452282 464 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 MTCO3P35-201ENST00000485582 781 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 AC016065.2-201ENST00000514530 444 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 MTCO2P32-201ENST00000514865 403 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 AC004696.1-201ENST00000614345 607 ntBASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
CCDC112Q8NEF3 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 VTRNA1-1-201ENST00000363120 99 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 RPL19P1-201ENST00000411635 428 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AC112492.1-201ENST00000449607 712 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 HMGB1P25-201ENST00000468402 607 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AC080014.1-201ENST00000496877 1201 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 RNU6-711P-201ENST00000517255 106 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AP004371.1-201ENST00000525240 214 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AC109635.4-202ENST00000531666 412 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 OR7K1P-201ENST00000546439 926 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AC023158.1-201ENST00000561632 1025 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AC008277.2-201ENST00000605196 797 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AL359535.1-201ENST00000612100 1087 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 AL137790.1-201ENST00000634283 177 ntBASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CCDC112Q8NEF3 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3□□□□□ -1.93
CCDC112Q8NEF3 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC112Q8NEF3 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC112Q8NEF3 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3□□□□□ -1.93
CCDC112Q8NEF3 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3□□□□□ -1.93
CCDC112Q8NEF3 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3□□□□□ -1.93
CCDC112Q8NEF3 AC022031.1-201ENST00000585985 2593 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 Y_RNA.510-201ENST00000384511 114 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 SNORA44-201ENST00000384584 132 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3□□□□□ -1.93
CCDC112Q8NEF3 RNA5SP181-201ENST00000410246 98 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 Z85994.2-201ENST00000434327 452 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 AC107083.1-201ENST00000439643 279 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 AC093156.1-201ENST00000440382 670 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3□□□□□ -1.93
CCDC112Q8NEF3 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3□□□□□ -1.93
CCDC112Q8NEF3 AL024509.2-201ENST00000493462 493 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
CCDC112Q8NEF3 KLHL2P1-201ENST00000508691 521 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 MTCO3P42-201ENST00000509488 518 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 MTCO3P39-201ENST00000514812 518 ntBASIC3□□□□□ -1.93
CCDC112Q8NEF3 AC008885.1-201ENST00000514930 301 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms