Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AC097468.3-201ENST00000607956 456 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AL022401.1-201ENST00000619498 108 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AL158801.5-201ENST00000623123 465 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
USP39Q53GS9 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP39Q53GS9 AL592437.2-201ENST00000421655 2434 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 LINC01355-201ENST00000566551 5444 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.77□□□□□ -1.65
USP39Q53GS9 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.77□□□□□ -1.65
USP39Q53GS9 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
USP39Q53GS9 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.77□□□□□ -1.65
USP39Q53GS9 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
USP39Q53GS9 AC006378.2-201ENST00000623178 2476 ntBASIC4.77□□□□□ -1.65
USP39Q53GS9 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.76□□□□□ -1.65
USP39Q53GS9 TLK1P1-201ENST00000456760 2440 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP39Q53GS9 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.76□□□□□ -1.65
USP39Q53GS9 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AL049555.1-201ENST00000562834 1933 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 OR52B1P-201ENST00000316506 909 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 Y_RNA.132-201ENST00000363421 102 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 SNORA51.2-201ENST00000364595 132 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AC140479.3-201ENST00000418944 1126 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.76□□□□□ -1.65
USP39Q53GS9 ISCA1P6-201ENST00000427740 390 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.76□□□□□ -1.65
USP39Q53GS9 GTF2IP20-201ENST00000431663 360 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 AC092809.1-201ENST00000441469 474 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AC132479.1-201ENST00000449160 144 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.76□□□□□ -1.65
USP39Q53GS9 TRGVB-201ENST00000453257 471 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 RN7SL41P-201ENST00000476144 297 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 RPL7P42-201ENST00000481005 679 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 AC090686.1-201ENST00000481577 749 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 AC007182.2-201ENST00000489251 402 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 RN7SL558P-201ENST00000497468 299 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USP39Q53GS9 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USP39Q53GS9 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AC010493.1-201ENST00000513479 292 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AC013828.2-201ENST00000532487 235 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AC008083.2-201ENST00000546707 476 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.76□□□□□ -1.65
USP39Q53GS9 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.76□□□□□ -1.65
USP39Q53GS9 HNRNPCP4-201ENST00000571636 900 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 MIR544B-201ENST00000582372 78 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 AC011712.1-201ENST00000588959 234 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 HMGN1P30-201ENST00000589286 268 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 BNIP3P23-201ENST00000599655 511 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.76□□□□□ -1.65
USP39Q53GS9 AC009268.2-201ENST00000621925 457 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
USP39Q53GS9 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP39Q53GS9 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP39Q53GS9 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
USP39Q53GS9 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
USP39Q53GS9 ZNF137P-201ENST00000456718 1920 ntBASIC4.76□□□□□ -1.65
USP39Q53GS9 DBF4P1-201ENST00000412976 1892 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
USP39Q53GS9 AC009643.2-201ENST00000603543 1448 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.75□□□□□ -1.65
USP39Q53GS9 AC009951.1-201ENST00000623674 2614 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 Y_RNA.25-201ENST00000362528 102 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 RNU6-451P-201ENST00000362921 107 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 Y_RNA.166-201ENST00000363730 102 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 RNY3P3-201ENST00000363816 102 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 RNA5SP509-201ENST00000364577 119 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 SNORA51.12-201ENST00000384448 134 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 RNU6-1122P-201ENST00000384449 107 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 MIR92A2-201ENST00000385299 75 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 RNU1-82P-201ENST00000390851 165 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 Z98745.1-201ENST00000402553 494 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP39Q53GS9 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.75□□□□□ -1.65
USP39Q53GS9 MTCO3P12-201ENST00000416718 547 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AC092634.6-201ENST00000418558 192 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.75□□□□□ -1.65
USP39Q53GS9 RPL36AP10-201ENST00000421785 322 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AL353729.1-201ENST00000425044 720 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.75□□□□□ -1.65
USP39Q53GS9 DYNLL1P7-201ENST00000429273 258 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AC092162.1-201ENST00000432828 434 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 H2AFZP5-201ENST00000446960 382 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 AC233279.1-201ENST00000455300 423 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 RN7SL517P-201ENST00000462240 305 ntBASIC4.75□□□□□ -1.65
USP39Q53GS9 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
USP39Q53GS9 AC015724.1-201ENST00000478577 156 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 280.4 ms