Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC011611.5-201ENST00000552477 578 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.64□□□□□ -2.15
COL7A1Q02388 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.64□□□□□ -2.15
COL7A1Q02388 AP004372.1-201ENST00000604842 844 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AC018690.1-201ENST00000608144 626 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 AL353746.1-201ENST00000566293 6881 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL7A1Q02388 AC012078.1-201ENST00000405035 1646 ntBASIC1.64□□□□□ -2.15
COL7A1Q02388 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL7A1Q02388 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
COL7A1Q02388 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC1.64□□□□□ -2.15
COL7A1Q02388 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC1.64□□□□□ -2.15
COL7A1Q02388 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
COL7A1Q02388 RNU6-392P-201ENST00000364926 101 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.63□□□□□ -2.15
COL7A1Q02388 RPS15AP28-201ENST00000435088 386 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 NFU1-207ENST00000462320 558 ntTSL 4 BASIC1.63□□□□□ -2.15
COL7A1Q02388 AC004263.1-201ENST00000479327 332 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 AC126177.3-201ENST00000551839 688 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 MIR5092-201ENST00000583139 88 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
COL7A1Q02388 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
COL7A1Q02388 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC1.63□□□□□ -2.15
COL7A1Q02388 PHKBP1-201ENST00000450951 1951 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
COL7A1Q02388 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC1.63□□□□□ -2.15
COL7A1Q02388 FGF7P8-201ENST00000402994 292 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
COL7A1Q02388 RPL23AP74-201ENST00000437246 471 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC1.63□□□□□ -2.15
COL7A1Q02388 CKS1BP7-201ENST00000522230 235 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
COL7A1Q02388 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC1.63□□□□□ -2.15
COL7A1Q02388 AC092628.2-201ENST00000622492 339 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC1.63□□□□□ -2.15
COL7A1Q02388 MTND5P29-201ENST00000458676 1807 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC1.63□□□□□ -2.15
COL7A1Q02388 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
COL7A1Q02388 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
COL7A1Q02388 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC1.63□□□□□ -2.15
COL7A1Q02388 AC017078.1-201ENST00000416146 368 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 AP1B1P2-201ENST00000416196 106 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 AL445646.1-201ENST00000431784 216 ntBASIC1.63□□□□□ -2.15
COL7A1Q02388 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC1.63□□□□□ -2.15
COL7A1Q02388 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC1.63□□□□□ -2.15
COL7A1Q02388 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC1.63□□□□□ -2.15
COL7A1Q02388 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC1.63□□□□□ -2.15
COL7A1Q02388 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC1.63□□□□□ -2.15
COL7A1Q02388 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
COL7A1Q02388 RAD1P1-201ENST00000231383 813 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 FRG1BP-201ENST00000278882 761 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 AL355379.1-201ENST00000405542 640 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 SNORA11.4-201ENST00000408823 129 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC1.62□□□□□ -2.15
COL7A1Q02388 TXNP6-201ENST00000510190 310 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 RNU6-295P-201ENST00000516901 104 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 AC100870.1-201ENST00000522035 505 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 MTCYBP20-201ENST00000524239 1129 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC1.62□□□□□ -2.15
COL7A1Q02388 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.62□□□□□ -2.15
COL7A1Q02388 AC002064.3-201ENST00000623448 346 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC1.62□□□□□ -2.15
COL7A1Q02388 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.62□□□□□ -2.15
COL7A1Q02388 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
COL7A1Q02388 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC1.62□□□□□ -2.15
COL7A1Q02388 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
COL7A1Q02388 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
COL7A1Q02388 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
COL7A1Q02388 GTF2H2B-203ENST00000508065 1432 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
COL7A1Q02388 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
COL7A1Q02388 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC1.62□□□□□ -2.15
COL7A1Q02388 MIR137-201ENST00000385223 102 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
COL7A1Q02388 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC1.62□□□□□ -2.15
COL7A1Q02388 AL606490.7-201ENST00000433136 191 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 MTND4LP16-201ENST00000440828 295 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 AL035551.1-201ENST00000446931 348 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 HMGB3P8-201ENST00000449709 577 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC1.62□□□□□ -2.15
COL7A1Q02388 SNORA4-201ENST00000584302 138 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 AC083760.1-201ENST00000589621 670 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 FRG1DP-201ENST00000635586 771 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 TMEM161BP1-201ENST00000457388 1457 ntBASIC1.62□□□□□ -2.15
COL7A1Q02388 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
COL7A1Q02388 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
COL7A1Q02388 SNORA67.3-201ENST00000384366 140 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AC080125.1-201ENST00000414888 684 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 RPS15AP6-201ENST00000420703 385 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AC135721.1-201ENST00000497954 479 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC1.61□□□□□ -2.15
COL7A1Q02388 AC091515.1-201ENST00000548110 679 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AC010378.1-201ENST00000619270 362 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.61□□□□□ -2.15
COL7A1Q02388 RNU6-457P-201ENST00000363999 107 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 RNA5SP210-201ENST00000391034 120 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 POLR2J4-204ENST00000418424 324 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AC080013.2-201ENST00000460866 323 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AC093278.1-201ENST00000494700 600 ntBASIC1.61□□□□□ -2.15
COL7A1Q02388 AC025881.1-201ENST00000518851 512 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms