Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
TNFRSF4P43489 NUP58P1-201ENST00000502546 1738 ntBASIC3.47□□□□□ -1.85
TNFRSF4P43489 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
TNFRSF4P43489 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 CEP170P1-201ENST00000502249 4587 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AP001350.1-201ENST00000601906 1524 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
TNFRSF4P43489 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
TNFRSF4P43489 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
TNFRSF4P43489 RNA5SP258-201ENST00000362750 119 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 SNORD116-12-201ENST00000384468 92 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 MIR506-201ENST00000384998 124 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC016769.3-201ENST00000396562 315 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 RNU2-42P-201ENST00000410697 113 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 HMGN1P24-201ENST00000412282 298 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC004552.1-201ENST00000419089 348 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 MRPS36P1-201ENST00000421291 307 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC091862.1-201ENST00000438016 1100 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 VN1R10P-201ENST00000447106 875 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AL031313.1-201ENST00000448435 256 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 RPS26P3-201ENST00000470205 348 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC108734.3-201ENST00000481241 1165 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC090543.2-201ENST00000483963 348 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC004057.1-201ENST00000485827 348 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 OR4G11P-201ENST00000492842 939 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC010460.2-201ENST00000509054 677 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 MTCYBP16-201ENST00000509187 1129 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 AP001207.2-201ENST00000519490 539 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 OR10V3P-201ENST00000525712 725 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC026333.2-201ENST00000542164 106 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 AL133457.1-201ENST00000564251 987 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
TNFRSF4P43489 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 VN1R83P-201ENST00000595685 445 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC021749.1-201ENST00000604322 607 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AL365400.2-201ENST00000605604 902 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AP001521.1-201ENST00000609150 300 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC024257.5-201ENST00000612739 531 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 MIR4727-201ENST00000622232 55 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC068787.1-201ENST00000623908 691 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 CYP3A51P-201ENST00000633513 256 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 ZNF833P-201ENST00000424938 1494 ntBASIC3.46□□□□□ -1.86
TNFRSF4P43489 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.46□□□□□ -1.86
TNFRSF4P43489 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
TNFRSF4P43489 AC107982.1-201ENST00000507171 1300 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
TNFRSF4P43489 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 ZNF29P-201ENST00000225587 168 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 RNU6-1249P-201ENST00000363237 111 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 Y_RNA.111-201ENST00000363248 100 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
TNFRSF4P43489 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 RNU6-629P-201ENST00000384061 103 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 SNORA40.2-201ENST00000390847 128 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 RNU4-47P-201ENST00000410876 114 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 TOMM22P1-201ENST00000418578 312 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 Z80107.1-201ENST00000436830 412 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
TNFRSF4P43489 MTCO3P20-201ENST00000454926 688 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
TNFRSF4P43489 AC108729.1-201ENST00000487812 947 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 AP001086.1-201ENST00000494882 321 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 RPL23AP55-201ENST00000498163 452 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 RNU6-1073P-201ENST00000517182 106 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 AC109635.4-202ENST00000531666 412 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 RFPL1S-203ENST00000539579 330 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.45□□□□□ -1.86
TNFRSF4P43489 MTND1P8-201ENST00000571424 950 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 MTND3P13-201ENST00000574391 343 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 MIR5004-201ENST00000579078 107 ntBASIC3.45□□□□□ -1.86
TNFRSF4P43489 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 160.6 ms