Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 NCOR1P1-202ENST00000486162 291 ntBASIC3.45□□□□□ -1.86
SOX3P41225 LINC00888-204ENST00000487386 421 ntBASIC3.45□□□□□ -1.86
SOX3P41225 XKRY-201ENST00000510392 1100 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.45□□□□□ -1.86
SOX3P41225 RNU1-95P-201ENST00000516357 160 ntBASIC3.45□□□□□ -1.86
SOX3P41225 RNU1-128P-201ENST00000516704 160 ntBASIC3.45□□□□□ -1.86
SOX3P41225 RN7SKP209-201ENST00000516888 304 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AC008802.1-201ENST00000519121 791 ntBASIC3.45□□□□□ -1.86
SOX3P41225 SUMO2P20-201ENST00000520803 283 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.45□□□□□ -1.86
SOX3P41225 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.45□□□□□ -1.86
SOX3P41225 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.45□□□□□ -1.86
SOX3P41225 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.45□□□□□ -1.86
SOX3P41225 GTF2IP22-201ENST00000554443 182 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.45□□□□□ -1.86
SOX3P41225 HSPE1P3-201ENST00000559254 309 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.45□□□□□ -1.86
SOX3P41225 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.45□□□□□ -1.86
SOX3P41225 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.45□□□□□ -1.86
SOX3P41225 AC009101.1-201ENST00000568135 242 ntBASIC3.45□□□□□ -1.86
SOX3P41225 LARP7P2-201ENST00000575306 125 ntBASIC3.45□□□□□ -1.86
SOX3P41225 ISCA1P3-201ENST00000577104 373 ntBASIC3.45□□□□□ -1.86
SOX3P41225 MIR4644-201ENST00000579929 84 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AP001180.3-201ENST00000582221 145 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.45□□□□□ -1.86
SOX3P41225 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.45□□□□□ -1.86
SOX3P41225 AC004987.4-201ENST00000603383 338 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.45□□□□□ -1.86
SOX3P41225 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
SOX3P41225 AC112200.1-201ENST00000625015 234 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.45□□□□□ -1.86
SOX3P41225 U6.101-201ENST00000637707 76 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AC103706.2-201ENST00000638080 240 ntBASIC3.45□□□□□ -1.86
SOX3P41225 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.45□□□□□ -1.86
SOX3P41225 AC095050.2-201ENST00000510748 1458 ntBASIC3.45□□□□□ -1.86
SOX3P41225 AL359893.1-201ENST00000447628 1580 ntBASIC3.45□□□□□ -1.86
SOX3P41225 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
SOX3P41225 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
SOX3P41225 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
SOX3P41225 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SOX3P41225 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
SOX3P41225 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 SNORA4.1-201ENST00000364263 144 ntBASIC3.44□□□□□ -1.86
SOX3P41225 SNORA5A-201ENST00000384111 134 ntBASIC3.44□□□□□ -1.86
SOX3P41225 MIR153-1-201ENST00000384914 90 ntBASIC3.44□□□□□ -1.86
SOX3P41225 RPL7P60-201ENST00000397636 735 ntBASIC3.44□□□□□ -1.86
SOX3P41225 EIF5P1-201ENST00000400019 1231 ntBASIC3.44□□□□□ -1.86
SOX3P41225 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.44□□□□□ -1.86
SOX3P41225 PIGPP2-201ENST00000411569 458 ntBASIC3.44□□□□□ -1.86
SOX3P41225 USP9YP33-201ENST00000412220 421 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 AL035423.1-201ENST00000420331 213 ntBASIC3.44□□□□□ -1.86
SOX3P41225 OFD1P18Y-201ENST00000420889 959 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC011233.1-201ENST00000422812 283 ntBASIC3.44□□□□□ -1.86
SOX3P41225 MTND4P20-201ENST00000424125 869 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AL593851.1-201ENST00000426171 157 ntBASIC3.44□□□□□ -1.86
SOX3P41225 PSMA2P3-201ENST00000429685 675 ntBASIC3.44□□□□□ -1.86
SOX3P41225 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 BMS1P19-201ENST00000433925 393 ntBASIC3.44□□□□□ -1.86
SOX3P41225 USP9YP35-201ENST00000435696 412 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 MTND4P6-201ENST00000438297 472 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.44□□□□□ -1.86
SOX3P41225 MTCO3P11-201ENST00000455103 774 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC004801.2-202ENST00000463559 283 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC091564.1-201ENST00000464563 479 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 AC108078.3-201ENST00000502633 489 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC114981.1-201ENST00000503897 678 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 HSPE1P23-201ENST00000509838 286 ntBASIC3.44□□□□□ -1.86
SOX3P41225 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 AC026412.2-201ENST00000512270 1075 ntBASIC3.44□□□□□ -1.86
SOX3P41225 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.44□□□□□ -1.86
SOX3P41225 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 AC006499.2-201ENST00000513470 337 ntBASIC3.44□□□□□ -1.86
SOX3P41225 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 HIGD1AP3-201ENST00000515857 278 ntBASIC3.44□□□□□ -1.86
SOX3P41225 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC104986.1-201ENST00000517978 436 ntBASIC3.44□□□□□ -1.86
SOX3P41225 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.44□□□□□ -1.86
SOX3P41225 DEFB131D-201ENST00000526803 184 ntBASIC3.44□□□□□ -1.86
SOX3P41225 OR8L1P-201ENST00000534005 955 ntBASIC3.44□□□□□ -1.86
SOX3P41225 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 AC008015.1-201ENST00000555505 465 ntBASIC3.44□□□□□ -1.86
SOX3P41225 CENPUP2-201ENST00000555897 1186 ntBASIC3.44□□□□□ -1.86
SOX3P41225 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.44□□□□□ -1.86
SOX3P41225 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.44□□□□□ -1.86
SOX3P41225 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.44□□□□□ -1.86
SOX3P41225 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.44□□□□□ -1.86
SOX3P41225 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.44□□□□□ -1.86
SOX3P41225 BNIP3P24-201ENST00000593398 557 ntBASIC3.44□□□□□ -1.86
SOX3P41225 VN1R90P-201ENST00000595717 726 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms