Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
BRCA1P38398 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
BRCA1P38398 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 MIR148B-201ENST00000362252 99 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 HSPE1P26-201ENST00000405341 275 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 VTA1P1-201ENST00000414044 866 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.2□□□□□ -1.9
BRCA1P38398 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.2□□□□□ -1.9
BRCA1P38398 RPS12P2-201ENST00000439728 269 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 RPL21P103-201ENST00000479921 488 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AC008565.1-201ENST00000509046 885 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 OR5H4P-201ENST00000510851 923 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 SNORA64.4-201ENST00000516632 81 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.2□□□□□ -1.9
BRCA1P38398 MTATP6P25-201ENST00000574491 261 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 MIR1273D-201ENST00000577266 86 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.2□□□□□ -1.9
BRCA1P38398 AC007938.3-201ENST00000604965 623 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC3.2□□□□□ -1.9
BRCA1P38398 AP006248.2-201ENST00000623309 592 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 MIR7153-201ENST00000637758 57 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 AP000526.1-201ENST00000603308 1388 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
BRCA1P38398 TAF9BP2-201ENST00000400856 499 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.2□□□□□ -1.9
BRCA1P38398 HGF-207ENST00000453018 721 ntTSL 3 BASIC3.2□□□□□ -1.9
BRCA1P38398 HMGB1P15-201ENST00000453854 435 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.2□□□□□ -1.9
BRCA1P38398 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.2□□□□□ -1.9
BRCA1P38398 RPL30P11-201ENST00000495304 339 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
BRCA1P38398 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.2□□□□□ -1.9
BRCA1P38398 AC008494.2-201ENST00000514544 370 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AC074029.1-201ENST00000552531 1044 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.2□□□□□ -1.9
BRCA1P38398 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.2□□□□□ -1.9
BRCA1P38398 AP000919.1-202ENST00000581139 1264 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 CBX3P2-202ENST00000583365 535 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 MIR4635-201ENST00000583759 79 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AC069304.3-201ENST00000603938 1084 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 AC004696.1-201ENST00000614345 607 ntBASIC3.2□□□□□ -1.9
BRCA1P38398 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
BRCA1P38398 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.19□□□□□ -1.9
BRCA1P38398 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
BRCA1P38398 MIR153-1-201ENST00000384914 90 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.19□□□□□ -1.9
BRCA1P38398 RPLP0P7-201ENST00000416050 667 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.19□□□□□ -1.9
BRCA1P38398 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.19□□□□□ -1.9
BRCA1P38398 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.19□□□□□ -1.9
BRCA1P38398 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.19□□□□□ -1.9
BRCA1P38398 RSL24D1P2-201ENST00000445584 366 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 EXTL2P1-201ENST00000446218 416 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.19□□□□□ -1.9
BRCA1P38398 CABYRP1-201ENST00000465493 1045 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 AC090543.1-201ENST00000492168 485 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 MTCO1P31-201ENST00000506355 492 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 AC008562.1-201ENST00000521763 330 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.19□□□□□ -1.9
BRCA1P38398 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
BRCA1P38398 AP003117.1-201ENST00000602771 554 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 AC022079.2-201ENST00000619739 566 ntBASIC3.19□□□□□ -1.9
BRCA1P38398 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC3.19□□□□□ -1.9
BRCA1P38398 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.19□□□□□ -1.9
BRCA1P38398 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
BRCA1P38398 EI24P2-201ENST00000397776 1076 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 SKINT1L-201ENST00000401057 817 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AL359511.1-201ENST00000402970 211 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.18□□□□□ -1.9
BRCA1P38398 AC245054.2-201ENST00000415639 319 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.18□□□□□ -1.9
BRCA1P38398 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.18□□□□□ -1.9
BRCA1P38398 MTND5P8-201ENST00000449817 1083 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 OR4G11P-201ENST00000492842 939 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 NIPA2P2-201ENST00000496376 1083 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AC021146.5-201ENST00000503544 545 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
BRCA1P38398 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC3.18□□□□□ -1.9
BRCA1P38398 HMGB1P46-201ENST00000520062 610 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.18□□□□□ -1.9
BRCA1P38398 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.18□□□□□ -1.9
BRCA1P38398 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.18□□□□□ -1.9
BRCA1P38398 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.18□□□□□ -1.9
BRCA1P38398 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.18□□□□□ -1.9
BRCA1P38398 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.18□□□□□ -1.9
BRCA1P38398 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.18□□□□□ -1.9
BRCA1P38398 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.18□□□□□ -1.9
BRCA1P38398 AC009039.2-201ENST00000624524 529 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AC026634.1-201ENST00000634369 198 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
BRCA1P38398 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
BRCA1P38398 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms