Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.14□□□□□ -1.75
BDNFP23560 SAP18P1-201ENST00000512058 390 ntBASIC4.14□□□□□ -1.75
BDNFP23560 AC087369.1-201ENST00000520775 996 ntBASIC4.14□□□□□ -1.75
BDNFP23560 MTCO1P49-201ENST00000523429 802 ntBASIC4.14□□□□□ -1.75
BDNFP23560 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.14□□□□□ -1.75
BDNFP23560 AC009712.1-201ENST00000564938 316 ntBASIC4.14□□□□□ -1.75
BDNFP23560 MIR3186-201ENST00000577404 85 ntBASIC4.14□□□□□ -1.75
BDNFP23560 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.14□□□□□ -1.75
BDNFP23560 AC012603.1-201ENST00000606424 528 ntBASIC4.14□□□□□ -1.75
BDNFP23560 AL451074.6-201ENST00000608512 729 ntBASIC4.14□□□□□ -1.75
BDNFP23560 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.14□□□□□ -1.75
BDNFP23560 AL138880.2-201ENST00000616214 239 ntBASIC4.14□□□□□ -1.75
BDNFP23560 AL591424.2-201ENST00000617023 128 ntBASIC4.14□□□□□ -1.75
BDNFP23560 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
BDNFP23560 MAPK10-362ENST00000641864 4484 ntBASIC4.14□□□□□ -1.75
BDNFP23560 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.13□□□□□ -1.75
BDNFP23560 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
BDNFP23560 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
BDNFP23560 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
BDNFP23560 Y_RNA.311-201ENST00000365068 96 ntBASIC4.13□□□□□ -1.75
BDNFP23560 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
BDNFP23560 MIR122-201ENST00000385044 85 ntBASIC4.13□□□□□ -1.75
BDNFP23560 MIR493-201ENST00000385254 89 ntBASIC4.13□□□□□ -1.75
BDNFP23560 DHFRP6-201ENST00000401776 268 ntBASIC4.13□□□□□ -1.75
BDNFP23560 AL354719.1-201ENST00000406535 843 ntBASIC4.13□□□□□ -1.75
BDNFP23560 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.13□□□□□ -1.75
BDNFP23560 RN7SKP27-201ENST00000410684 333 ntBASIC4.13□□□□□ -1.75
BDNFP23560 TPMTP2-201ENST00000414372 726 ntBASIC4.13□□□□□ -1.75
BDNFP23560 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.13□□□□□ -1.75
BDNFP23560 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.13□□□□□ -1.75
BDNFP23560 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.13□□□□□ -1.75
BDNFP23560 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.13□□□□□ -1.75
BDNFP23560 RPL21P11-201ENST00000461458 483 ntBASIC4.13□□□□□ -1.75
BDNFP23560 MTCYBP17-201ENST00000503579 789 ntBASIC4.13□□□□□ -1.75
BDNFP23560 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
BDNFP23560 AC113420.1-201ENST00000507903 571 ntBASIC4.13□□□□□ -1.75
BDNFP23560 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC4.13□□□□□ -1.75
BDNFP23560 AC008837.2-201ENST00000513076 418 ntBASIC4.13□□□□□ -1.75
BDNFP23560 AC006499.2-201ENST00000513470 337 ntBASIC4.13□□□□□ -1.75
BDNFP23560 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.13□□□□□ -1.75
BDNFP23560 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.13□□□□□ -1.75
BDNFP23560 GNRHR2P1-201ENST00000555315 631 ntBASIC4.13□□□□□ -1.75
BDNFP23560 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.13□□□□□ -1.75
BDNFP23560 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.13□□□□□ -1.75
BDNFP23560 AC011260.1-201ENST00000578420 472 ntBASIC4.13□□□□□ -1.75
BDNFP23560 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.13□□□□□ -1.75
BDNFP23560 AL390208.1-201ENST00000605885 644 ntBASIC4.13□□□□□ -1.75
BDNFP23560 MIR6130-201ENST00000619419 109 ntBASIC4.13□□□□□ -1.75
BDNFP23560 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.13□□□□□ -1.75
BDNFP23560 AC009812.4-201ENST00000569134 1805 ntBASIC4.13□□□□□ -1.75
BDNFP23560 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
BDNFP23560 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.13□□□□□ -1.75
BDNFP23560 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
BDNFP23560 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.13□□□□□ -1.75
BDNFP23560 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.12□□□□□ -1.75
BDNFP23560 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
BDNFP23560 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.12□□□□□ -1.75
BDNFP23560 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
BDNFP23560 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
BDNFP23560 AC092326.2-201ENST00000624772 1561 ntBASIC4.12□□□□□ -1.75
BDNFP23560 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.12□□□□□ -1.75
BDNFP23560 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.12□□□□□ -1.75
BDNFP23560 MIR135A2-201ENST00000384854 100 ntBASIC4.12□□□□□ -1.75
BDNFP23560 MIR554-201ENST00000384874 96 ntBASIC4.12□□□□□ -1.75
BDNFP23560 U3.42-201ENST00000408746 214 ntBASIC4.12□□□□□ -1.75
BDNFP23560 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.12□□□□□ -1.75
BDNFP23560 AL590383.1-201ENST00000428602 75 ntBASIC4.12□□□□□ -1.75
BDNFP23560 AL356867.1-201ENST00000429623 299 ntBASIC4.12□□□□□ -1.75
BDNFP23560 AL445584.1-201ENST00000431451 330 ntBASIC4.12□□□□□ -1.75
BDNFP23560 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.12□□□□□ -1.75
BDNFP23560 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.12□□□□□ -1.75
BDNFP23560 HMGB1P37-201ENST00000439613 609 ntBASIC4.12□□□□□ -1.75
BDNFP23560 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.12□□□□□ -1.75
BDNFP23560 SNORA84-201ENST00000459229 133 ntBASIC4.12□□□□□ -1.75
BDNFP23560 AC084357.1-201ENST00000473404 255 ntBASIC4.12□□□□□ -1.75
BDNFP23560 WBP1LP4-201ENST00000505043 344 ntBASIC4.12□□□□□ -1.75
BDNFP23560 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.12□□□□□ -1.75
BDNFP23560 TXNP6-201ENST00000510190 310 ntBASIC4.12□□□□□ -1.75
BDNFP23560 CYCSP30-201ENST00000546447 172 ntBASIC4.12□□□□□ -1.75
BDNFP23560 AC107016.1-201ENST00000550463 337 ntBASIC4.12□□□□□ -1.75
BDNFP23560 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.12□□□□□ -1.75
BDNFP23560 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.12□□□□□ -1.75
BDNFP23560 AC020914.4-201ENST00000597690 277 ntBASIC4.12□□□□□ -1.75
BDNFP23560 BBIP1P1-201ENST00000602999 279 ntBASIC4.12□□□□□ -1.75
BDNFP23560 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
BDNFP23560 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.12□□□□□ -1.75
BDNFP23560 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
BDNFP23560 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.12□□□□□ -1.75
BDNFP23560 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
BDNFP23560 AL161781.1-201ENST00000354277 403 ntBASIC4.11□□□□□ -1.75
BDNFP23560 Y_RNA.465-201ENST00000384293 102 ntBASIC4.11□□□□□ -1.75
BDNFP23560 SNORA3.3-201ENST00000408712 125 ntBASIC4.11□□□□□ -1.75
BDNFP23560 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.11□□□□□ -1.75
BDNFP23560 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.11□□□□□ -1.75
BDNFP23560 NANOGP2-201ENST00000435391 727 ntBASIC4.11□□□□□ -1.75
BDNFP23560 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.11□□□□□ -1.75
BDNFP23560 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.11□□□□□ -1.75
BDNFP23560 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.11□□□□□ -1.75
BDNFP23560 AC104563.1-201ENST00000476147 376 ntBASIC4.11□□□□□ -1.75
BDNFP23560 RPL31P61-201ENST00000496160 376 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms