Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.18□□□□□ -1.9
SDC1P18827 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
SDC1P18827 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.18□□□□□ -1.9
SDC1P18827 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.18□□□□□ -1.9
SDC1P18827 GABPAP-201ENST00000419271 1356 ntBASIC3.18□□□□□ -1.9
SDC1P18827 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
SDC1P18827 NACA3P-201ENST00000359690 648 ntBASIC3.18□□□□□ -1.9
SDC1P18827 RNU4-68P-201ENST00000364314 141 ntBASIC3.18□□□□□ -1.9
SDC1P18827 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 RNU6-413P-201ENST00000384115 107 ntBASIC3.18□□□□□ -1.9
SDC1P18827 MIR506-201ENST00000384998 124 ntBASIC3.18□□□□□ -1.9
SDC1P18827 RNU6-1242P-201ENST00000391052 103 ntBASIC3.18□□□□□ -1.9
SDC1P18827 PTMAP5-201ENST00000393073 333 ntBASIC3.18□□□□□ -1.9
SDC1P18827 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.18□□□□□ -1.9
SDC1P18827 EIF5P1-201ENST00000400019 1231 ntBASIC3.18□□□□□ -1.9
SDC1P18827 ERHP2-201ENST00000402323 299 ntBASIC3.18□□□□□ -1.9
SDC1P18827 RNU6ATAC-201ENST00000408749 126 ntBASIC3.18□□□□□ -1.9
SDC1P18827 RNU6-584P-201ENST00000410350 95 ntBASIC3.18□□□□□ -1.9
SDC1P18827 RNU2-37P-201ENST00000410695 177 ntBASIC3.18□□□□□ -1.9
SDC1P18827 TOMM22P1-201ENST00000418578 312 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AIMP1P1-201ENST00000418670 937 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AL513175.2-201ENST00000422071 443 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.18□□□□□ -1.9
SDC1P18827 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.18□□□□□ -1.9
SDC1P18827 BX890604.2-201ENST00000427883 474 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.18□□□□□ -1.9
SDC1P18827 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 RPL21P23-201ENST00000446654 460 ntBASIC3.18□□□□□ -1.9
SDC1P18827 VN1R10P-201ENST00000447106 875 ntBASIC3.18□□□□□ -1.9
SDC1P18827 NPM1P49-201ENST00000448027 714 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC092155.2-201ENST00000454675 477 ntBASIC3.18□□□□□ -1.9
SDC1P18827 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.18□□□□□ -1.9
SDC1P18827 AC005410.1-202ENST00000460347 485 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC092757.1-201ENST00000467293 467 ntBASIC3.18□□□□□ -1.9
SDC1P18827 NCOR1P1-202ENST00000486162 291 ntBASIC3.18□□□□□ -1.9
SDC1P18827 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.18□□□□□ -1.9
SDC1P18827 PHBP14-201ENST00000512887 367 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.18□□□□□ -1.9
SDC1P18827 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.18□□□□□ -1.9
SDC1P18827 AP004242.1-201ENST00000533701 349 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.18□□□□□ -1.9
SDC1P18827 AL132857.1-201ENST00000555180 708 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.18□□□□□ -1.9
SDC1P18827 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.18□□□□□ -1.9
SDC1P18827 SNRPGP15-201ENST00000600149 222 ntBASIC3.18□□□□□ -1.9
SDC1P18827 IGHV3-29-201ENST00000604817 344 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC016877.3-201ENST00000606778 504 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC011816.2-201ENST00000607089 556 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC027449.1-201ENST00000608890 407 ntBASIC3.18□□□□□ -1.9
SDC1P18827 AC099778.2-201ENST00000610904 211 ntBASIC3.18□□□□□ -1.9
SDC1P18827 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.18□□□□□ -1.9
SDC1P18827 AC120349.2-201ENST00000625002 298 ntBASIC3.18□□□□□ -1.9
SDC1P18827 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.18□□□□□ -1.9
SDC1P18827 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SDC1P18827 AL157700.1-201ENST00000561973 1432 ntBASIC3.18□□□□□ -1.9
SDC1P18827 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SDC1P18827 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 ZNF826P-207ENST00000622273 1910 ntBASIC3.17□□□□□ -1.9
SDC1P18827 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.17□□□□□ -1.9
SDC1P18827 RNU1-70P-201ENST00000362618 164 ntBASIC3.17□□□□□ -1.9
SDC1P18827 SNORD116.1-201ENST00000365628 92 ntBASIC3.17□□□□□ -1.9
SDC1P18827 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SDC1P18827 RNU6-906P-201ENST00000384700 70 ntBASIC3.17□□□□□ -1.9
SDC1P18827 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.17□□□□□ -1.9
SDC1P18827 AL583834.1-201ENST00000406943 343 ntBASIC3.17□□□□□ -1.9
SDC1P18827 RNA5SP80-201ENST00000410475 111 ntBASIC3.17□□□□□ -1.9
SDC1P18827 AC068533.2-201ENST00000411872 306 ntBASIC3.17□□□□□ -1.9
SDC1P18827 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.17□□□□□ -1.9
SDC1P18827 AC012065.2-201ENST00000421295 375 ntBASIC3.17□□□□□ -1.9
SDC1P18827 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.17□□□□□ -1.9
SDC1P18827 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 USP9YP24-201ENST00000434374 697 ntBASIC3.17□□□□□ -1.9
SDC1P18827 AC007389.2-201ENST00000434630 306 ntBASIC3.17□□□□□ -1.9
SDC1P18827 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.17□□□□□ -1.9
SDC1P18827 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.17□□□□□ -1.9
SDC1P18827 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.17□□□□□ -1.9
SDC1P18827 AC092641.1-201ENST00000440229 772 ntBASIC3.17□□□□□ -1.9
SDC1P18827 TXNP1-201ENST00000441872 371 ntBASIC3.17□□□□□ -1.9
SDC1P18827 USP9YP17-201ENST00000444617 696 ntBASIC3.17□□□□□ -1.9
SDC1P18827 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.17□□□□□ -1.9
SDC1P18827 RPL5P24-201ENST00000463742 885 ntBASIC3.17□□□□□ -1.9
SDC1P18827 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SDC1P18827 AC092451.1-201ENST00000480211 153 ntBASIC3.17□□□□□ -1.9
SDC1P18827 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.17□□□□□ -1.9
SDC1P18827 AC010460.2-201ENST00000509054 677 ntBASIC3.17□□□□□ -1.9
SDC1P18827 SNORA64.4-201ENST00000516632 81 ntBASIC3.17□□□□□ -1.9
SDC1P18827 TRMT10BP1-201ENST00000519377 943 ntBASIC3.17□□□□□ -1.9
SDC1P18827 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.17□□□□□ -1.9
SDC1P18827 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.17□□□□□ -1.9
SDC1P18827 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SDC1P18827 AC005832.3-201ENST00000537929 631 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms