Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC005189.1-201ENST00000431286 310 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 MTCO1P43-201ENST00000431831 488 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 HMGB3P11-201ENST00000440127 604 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXC4P09017 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC4P09017 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC4P09017 AL136126.1-201ENST00000473603 402 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC006445.1-201ENST00000491925 405 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC3.14□□□□□ -1.91
HOXC4P09017 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC4P09017 RN7SKP265-201ENST00000516448 223 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AP001207.2-201ENST00000519490 539 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC4P09017 NDUFB9P3-201ENST00000521269 501 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC083923.1-201ENST00000523708 376 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC087894.1-201ENST00000538359 518 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC4P09017 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC4P09017 AC090616.5-202ENST00000582111 297 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AL022067.1-201ENST00000602426 454 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AL160281.1-201ENST00000605307 311 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC099785.1-201ENST00000605697 437 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AL157392.4-201ENST00000609756 345 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 uc_338.25-201ENST00000613756 156 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 VN1R9P-201ENST00000614184 867 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC079395.3-201ENST00000615161 484 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.14□□□□□ -1.91
HOXC4P09017 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXC4P09017 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXC4P09017 AC068787.1-201ENST00000623908 691 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC006963.1-201ENST00000624003 1052 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 AC017104.5-201ENST00000637647 639 ntBASIC3.14□□□□□ -1.91
HOXC4P09017 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.14□□□□□ -1.91
HOXC4P09017 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC4P09017 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HOXC4P09017 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
HOXC4P09017 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXC4P09017 MTND5P28-201ENST00000438005 1594 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.13□□□□□ -1.91
HOXC4P09017 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXC4P09017 ENSAP3-201ENST00000312710 333 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 RNU5B-4P-201ENST00000363508 111 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 RNU6-468P-201ENST00000384003 109 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 MIR23A-201ENST00000385245 73 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 SNORA48.5-201ENST00000391143 135 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AF228730.1-201ENST00000397972 663 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 MIR1250-201ENST00000408098 113 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXC4P09017 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC4P09017 RPS7P2-201ENST00000435134 607 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXC4P09017 MTND1P31-201ENST00000449206 961 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC4P09017 AC233982.1-201ENST00000451247 436 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AC008280.2-201ENST00000455473 307 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC4P09017 AC008427.1-201ENST00000503102 655 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXC4P09017 HIGD1AP3-201ENST00000515857 278 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AC091163.3-201ENST00000518269 1144 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 LRRC34P1-201ENST00000542742 915 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AP003717.3-201ENST00000544832 1180 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.13□□□□□ -1.91
HOXC4P09017 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC4P09017 AC106734.1-201ENST00000568646 663 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC4P09017 AC009974.1-201ENST00000608881 455 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AC004908.3-201ENST00000610248 625 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.13□□□□□ -1.91
HOXC4P09017 AC093875.1-201ENST00000623688 504 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC4P09017 AC006927.2-201ENST00000639256 389 ntBASIC3.13□□□□□ -1.91
HOXC4P09017 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXC4P09017 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC4P09017 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
HOXC4P09017 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
HOXC4P09017 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HOXC4P09017 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
HOXC4P09017 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
HOXC4P09017 SNORA48.2-201ENST00000390926 124 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 AC096664.2-201ENST00000411843 406 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 RPS7P13-201ENST00000413955 498 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 PTP4A1P7-201ENST00000423476 514 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC4P09017 AL513175.1-201ENST00000431492 780 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC4P09017 AC127537.2-201ENST00000439258 465 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC4P09017 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC4P09017 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC4P09017 NPM1P49-201ENST00000448027 714 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC4P09017 RPL23AP15-201ENST00000450202 459 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC4P09017 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXC4P09017 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC4P09017 RPL21P47-201ENST00000483696 477 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 MTCYBP35-201ENST00000503630 1137 ntBASIC3.12□□□□□ -1.91
HOXC4P09017 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms