Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC88BA6NC98 TRGV5P-201ENST00000419915 354 ntBASIC3.8□□□□□ -1.8
CCDC88BA6NC98 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC88BA6NC98 CCNHP1-201ENST00000513311 678 ntBASIC3.8□□□□□ -1.8
CCDC88BA6NC98 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC88BA6NC98 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC88BA6NC98 OR4H12P-201ENST00000556269 907 ntBASIC3.8□□□□□ -1.8
CCDC88BA6NC98 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC88BA6NC98 AC135628.1-201ENST00000568867 534 ntBASIC3.8□□□□□ -1.8
CCDC88BA6NC98 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC88BA6NC98 GABPAP-201ENST00000419271 1356 ntBASIC3.8□□□□□ -1.8
CCDC88BA6NC98 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
CCDC88BA6NC98 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC88BA6NC98 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC88BA6NC98 SNORA80E-201ENST00000384744 137 ntBASIC3.79□□□□□ -1.8
CCDC88BA6NC98 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 RAD51AP1P1-201ENST00000484195 1001 ntBASIC3.79□□□□□ -1.8
CCDC88BA6NC98 SNORA70.14-201ENST00000516205 110 ntBASIC3.79□□□□□ -1.8
CCDC88BA6NC98 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 MTCYBP28-201ENST00000566728 1132 ntBASIC3.79□□□□□ -1.8
CCDC88BA6NC98 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 AC021733.2-201ENST00000518830 497 ntBASIC3.79□□□□□ -1.8
CCDC88BA6NC98 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.79□□□□□ -1.8
CCDC88BA6NC98 AC022336.2-201ENST00000568966 2538 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
CCDC88BA6NC98 AL450326.2-201ENST00000421913 1962 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 AL136964.1-201ENST00000622038 2990 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 U8.8-201ENST00000365399 135 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC88BA6NC98 AL354719.1-201ENST00000406535 843 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 VTA1P1-201ENST00000414044 866 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC88BA6NC98 RNA5SP458-201ENST00000516188 119 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC88BA6NC98 AP004247.3-201ENST00000608682 624 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 AC245517.5-201ENST00000611529 162 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC88BA6NC98 AC092184.1-201ENST00000625042 715 ntBASIC3.78□□□□□ -1.8
CCDC88BA6NC98 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC88BA6NC98 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC88BA6NC98 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC88BA6NC98 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
CCDC88BA6NC98 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC88BA6NC98 SNORA11.4-201ENST00000408823 129 ntBASIC3.77□□□□□ -1.81
CCDC88BA6NC98 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC88BA6NC98 AL445646.1-201ENST00000431784 216 ntBASIC3.77□□□□□ -1.81
CCDC88BA6NC98 AC007677.1-201ENST00000445757 515 ntBASIC3.77□□□□□ -1.81
CCDC88BA6NC98 HMGB1P48-201ENST00000446155 598 ntBASIC3.77□□□□□ -1.81
CCDC88BA6NC98 RN7SL499P-201ENST00000481141 276 ntBASIC3.77□□□□□ -1.81
CCDC88BA6NC98 AK6P1-201ENST00000540219 478 ntBASIC3.77□□□□□ -1.81
CCDC88BA6NC98 CBX3P5-201ENST00000552017 521 ntBASIC3.77□□□□□ -1.81
CCDC88BA6NC98 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC88BA6NC98 AP001521.1-201ENST00000609150 300 ntBASIC3.77□□□□□ -1.81
CCDC88BA6NC98 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 PNPT1P2-201ENST00000456768 2050 ntBASIC3.76□□□□□ -1.81
CCDC88BA6NC98 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 SNORA25.6-201ENST00000364121 118 ntBASIC3.76□□□□□ -1.81
CCDC88BA6NC98 RN7SKP123-201ENST00000410732 291 ntBASIC3.76□□□□□ -1.81
CCDC88BA6NC98 CYCSP49-201ENST00000420810 319 ntBASIC3.76□□□□□ -1.81
CCDC88BA6NC98 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 AC078814.3-201ENST00000553036 491 ntBASIC3.76□□□□□ -1.81
CCDC88BA6NC98 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC88BA6NC98 AL161431.1-201ENST00000618966 4205 ntBASIC3.75□□□□□ -1.81
CCDC88BA6NC98 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC88BA6NC98 AL118520.1-201ENST00000450770 291 ntBASIC3.75□□□□□ -1.81
CCDC88BA6NC98 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC88BA6NC98 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC88BA6NC98 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88BA6NC98 RNU6-295P-201ENST00000516901 104 ntBASIC3.75□□□□□ -1.81
CCDC88BA6NC98 AC068339.2-201ENST00000534395 618 ntBASIC3.75□□□□□ -1.81
CCDC88BA6NC98 MIR4506-201ENST00000584693 77 ntBASIC3.75□□□□□ -1.81
CCDC88BA6NC98 AC006254.3-201ENST00000603353 884 ntBASIC3.75□□□□□ -1.81
CCDC88BA6NC98 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88BA6NC98 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88BA6NC98 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC88BA6NC98 AC091564.4-201ENST00000533934 2194 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 AC002543.1-201ENST00000299783 1954 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 AC004866.2-201ENST00000438285 481 ntBASIC3.74□□□□□ -1.81
CCDC88BA6NC98 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms