Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ARF4P2-201ENST00000430209 526 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AC092641.1-201ENST00000440229 772 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AL606517.1-201ENST00000446914 387 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 RNF148-202ENST00000447240 839 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 HMGB3P22-202ENST00000451823 572 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 PTGES3P5-201ENST00000455109 434 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AL136097.1-201ENST00000456945 913 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 RNU7-170P-201ENST00000459303 61 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AL049830.2-201ENST00000480072 201 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AC010460.2-201ENST00000509054 677 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 MTND2P32-201ENST00000521584 1038 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 TRAV15-201ENST00000556680 249 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 GTF2IP8-201ENST00000560687 584 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AL360157.1-201ENST00000565962 87 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AP001029.3-201ENST00000588063 596 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 HMGB1P50-201ENST00000605814 607 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 RNU1-30P-201ENST00000606575 163 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AC016877.3-201ENST00000606778 504 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 PLCE1P1-201ENST00000622094 305 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 AL078595.3-201ENST00000623815 1166 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 MKKS-204ENST00000639674 192 ntBASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
PCDHGA1Q9Y5H4 ZNF962P-201ENST00000443465 3140 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 RNU4-68P-201ENST00000364314 141 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 RNA5SP51-201ENST00000364750 119 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 Z98941.1-201ENST00000407764 100 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 RNA5SP306-201ENST00000411087 107 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 OR1AA1P-201ENST00000419597 916 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 GTF2IP23-201ENST00000423746 351 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 EEF1A1P39-201ENST00000440791 250 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 RPL7P52-201ENST00000449200 742 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC073387.1-201ENST00000453261 709 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 HMGB1P15-201ENST00000453854 435 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 RFC5P1-201ENST00000454419 874 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 RN7SL601P-201ENST00000471221 293 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC006517.1-201ENST00000480485 328 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC114322.1-201ENST00000506771 926 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC004062.1-201ENST00000509926 645 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 RNU1-61P-201ENST00000516107 151 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 MIR3922-201ENST00000585192 84 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC011471.1-201ENST00000585766 187 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 BNIP3P24-201ENST00000593398 557 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC091046.2-201ENST00000620775 665 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 AC002546.1-201ENST00000588041 2504 ntBASIC3.68□□□□□ -1.82
PCDHGA1Q9Y5H4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 MTCO1P23-201ENST00000415223 1526 ntBASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 RNU6-413P-201ENST00000384115 107 ntBASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 ERHP2-201ENST00000402323 299 ntBASIC3.67□□□□□ -1.82
PCDHGA1Q9Y5H4 MTHFD2P2-201ENST00000407725 247 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms