Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RPL31P61-201ENST00000496160 376 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC096751.1-202ENST00000502691 1067 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC099522.1-202ENST00000514718 367 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AP002748.2-201ENST00000528671 348 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 TVP23BP1-201ENST00000557500 617 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC027807.1-201ENST00000559921 996 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 HMGB3P26-201ENST00000560051 582 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 MIR5697-201ENST00000578045 78 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 TPMTP1-201ENST00000592307 737 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC234771.5-201ENST00000600161 514 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 AC107304.1-201ENST00000604229 296 ntBASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.85□□□□□ -1.63
LIMCH1Q9UPQ0 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 MIR937-201ENST00000401271 86 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC011933.1-201ENST00000413334 321 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 MTATP6P27-201ENST00000416987 621 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 OR2B8P-201ENST00000432841 938 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 GDI2P2-201ENST00000445131 608 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC002381.1-201ENST00000447049 280 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 HMGB3P22-202ENST00000451823 572 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 OR9M1P-201ENST00000459641 921 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC116533.1-201ENST00000459748 321 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AL136126.1-201ENST00000473603 402 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC112204.1-201ENST00000502591 103 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC107401.1-201ENST00000503426 685 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC016065.2-201ENST00000514530 444 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 NTS-203ENST00000551529 801 ntTSL 3 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AL353997.4-201ENST00000586196 166 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC022916.3-201ENST00000592961 742 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 BCRP9-201ENST00000605312 388 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 AC004009.2-201ENST00000623016 728 ntBASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
LIMCH1Q9UPQ0 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
LIMCH1Q9UPQ0 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
LIMCH1Q9UPQ0 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.84□□□□□ -1.64
LIMCH1Q9UPQ0 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC011155.1-201ENST00000316512 456 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AL161781.1-201ENST00000354277 403 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 ENSAP1-201ENST00000392855 326 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AIMP1P1-201ENST00000418670 937 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AL358472.1-201ENST00000431295 329 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC091862.1-201ENST00000438016 1100 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 CBX1P1-201ENST00000440184 427 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 RPL7P36-201ENST00000444633 681 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 HMGB3P21-201ENST00000452483 547 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC041039.1-201ENST00000485656 536 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 AC034222.1-201ENST00000494052 532 ntBASIC4.83□□□□□ -1.64
LIMCH1Q9UPQ0 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms