Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC109446.4-201ENST00000623235 2755 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC093849.1-201ENST00000563631 2209 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 AC027228.2-201ENST00000567141 2154 ntBASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.33□□□□□ -1.4
LIMD1Q9UGP4 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC079753.1-201ENST00000623243 3868 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 SNORA23-201ENST00000365128 182 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 RNU6-596P-201ENST00000365395 98 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 Y_RNA.526-201ENST00000384572 110 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 TRAPPC2P10-201ENST00000415662 323 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AL160275.3-201ENST00000423876 471 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 ARL5AP4-201ENST00000430731 512 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 GAPDHP58-201ENST00000438477 1006 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 RNU6-1132P-201ENST00000459214 107 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 RN7SL269P-201ENST00000467795 305 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 IGHV3-76-201ENST00000522465 295 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 OR5D17P-201ENST00000531492 978 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC007375.1-201ENST00000554513 578 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC044860.2-201ENST00000561005 179 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 MIR4700-201ENST00000578311 74 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 MIR4716-201ENST00000579628 84 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC125232.2-201ENST00000592457 143 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AL136131.3-201ENST00000607600 188 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC118658.2-201ENST00000618697 459 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC018445.2-201ENST00000622987 260 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AP000550.3-201ENST00000637734 379 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 PARP4P2-201ENST00000446672 3326 ntBASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
LIMD1Q9UGP4 AC010624.4-201ENST00000597606 1351 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 FAM91A3P-201ENST00000456826 2544 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 RNU6-989P-201ENST00000362756 107 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 RN7SKP115-201ENST00000363177 317 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 U3.7-201ENST00000363668 216 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 RNU6-1059P-201ENST00000363752 98 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 RNU6-146P-201ENST00000384602 108 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 RPL21P1-201ENST00000399532 476 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 DPPA2P3-201ENST00000411853 655 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 OR1H1P-201ENST00000448731 937 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 AC133473.1-201ENST00000455173 299 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 PCMTD1P1-201ENST00000455560 355 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 AC091180.1-201ENST00000462104 372 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 FTH1P2-201ENST00000466086 412 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 RN7SL189P-201ENST00000468631 289 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 RNU6-941P-201ENST00000516346 108 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 AC009120.3-201ENST00000563335 499 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 AC034229.2-201ENST00000566945 2508 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 BTBD10P1-201ENST00000549824 1352 ntBASIC6.31□□□□□ -1.4
LIMD1Q9UGP4 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.3□□□□□ -1.4
LIMD1Q9UGP4 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms