Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 AL442639.1-201ENST00000625030 1899 ntBASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 OR56B2P-202ENST00000641377 2453 ntBASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC6.15□□□□□ -1.43
CCDC87Q9NVE4 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AL445437.1-201ENST00000623157 3087 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 RNA5SP258-201ENST00000362750 119 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 RNU6-1207P-201ENST00000384343 107 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 U3.20-201ENST00000390909 217 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 RPL36AP36-201ENST00000418616 301 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 RPS15AP12-201ENST00000419498 388 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 VTI1BP4-201ENST00000427516 527 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 UBE2V1P13-201ENST00000436983 439 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 MTND4P19-201ENST00000446659 478 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 PLGLA-201ENST00000465668 449 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 RPS27AP18-201ENST00000515536 459 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 RNA5SP337-201ENST00000517007 109 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AC068993.1-201ENST00000546724 589 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 MIR3939-201ENST00000582614 106 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AC007687.1-201ENST00000602704 304 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AC123786.2-201ENST00000603459 275 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AL391813.2-201ENST00000609113 322 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 uc_338.5-201ENST00000611839 155 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AC233309.1-201ENST00000619522 751 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 USP12-203ENST00000620323 349 ntTSL 3 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AC009318.4-201ENST00000620496 486 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AL160413.1-201ENST00000622780 310 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 AC108467.2-201ENST00000617640 1597 ntBASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC6.14□□□□□ -1.43
CCDC87Q9NVE4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 RNU6-97P-201ENST00000363387 104 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 RNY4P16-201ENST00000364768 94 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 RNU6-74P-201ENST00000384235 107 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 RNU6-606P-201ENST00000384721 111 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 RNU2-9P-201ENST00000410194 145 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 RN7SKP235-201ENST00000410662 305 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 BX276092.6-201ENST00000430476 250 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC104651.2-201ENST00000447549 528 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 BX276092.8-201ENST00000455722 250 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC011276.1-201ENST00000469688 323 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 RPL30P11-201ENST00000495304 339 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 OR5B19P-201ENST00000531766 928 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC068831.4-201ENST00000556118 109 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC243960.4-201ENST00000600532 288 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC105429.2-201ENST00000610567 517 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 Y_RNA.812-201ENST00000610788 101 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 Y_RNA.784-201ENST00000613803 101 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC130324.3-201ENST00000614165 542 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 Y_RNA.787-201ENST00000616522 101 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 Y_RNA.780-201ENST00000617336 101 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 Y_RNA.801-201ENST00000619005 101 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AL356585.4-201ENST00000623078 1229 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC100810.6-201ENST00000638068 285 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AP000756.2-201ENST00000624168 2567 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 SMG1P6-201ENST00000532337 2930 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 ATP8A2P2-201ENST00000437678 1568 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC011460.1-201ENST00000636268 1834 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 AC020633.1-201ENST00000468439 2247 ntBASIC6.13□□□□□ -1.43
CCDC87Q9NVE4 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms