Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 FABP5P12-201ENST00000515543 389 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 SNORA31.1-201ENST00000515993 133 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 RNU6-27P-201ENST00000516146 107 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 SNORA31.5-201ENST00000516190 133 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 MIR2276-201ENST00000516886 89 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC107934.2-201ENST00000518653 310 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AP001804.3-201ENST00000525146 880 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 MTCO3P24-201ENST00000572729 782 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC005951.1-201ENST00000576706 485 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AL020997.2-201ENST00000602607 184 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC010591.1-201ENST00000603941 649 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC073387.2-201ENST00000604797 784 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC124016.2-201ENST00000610058 665 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AC008083.4-201ENST00000615076 444 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 AL138955.1-201ENST00000622881 1040 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 MIR7153-201ENST00000637758 57 ntBASIC3.47□□□□□ -1.85
VPS39Q96JC1 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS39Q96JC1 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
VPS39Q96JC1 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.85
VPS39Q96JC1 AC103988.1-201ENST00000566382 2177 ntBASIC3.46□□□□□ -1.85
VPS39Q96JC1 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
VPS39Q96JC1 RNU6-839P-201ENST00000363347 108 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC096533.1-201ENST00000411645 353 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 CYCSP19-201ENST00000411715 316 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AL035423.1-201ENST00000420331 213 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 USP9YP36-201ENST00000424581 829 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 RPL23AP82-202ENST00000427528 469 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC012497.1-201ENST00000429392 575 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 TRBV26OR9-2-201ENST00000432077 293 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 BX679664.1-201ENST00000434429 253 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AL645638.1-201ENST00000440519 361 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 NOTCH2P1-201ENST00000443481 624 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 CENPBD1P1-201ENST00000464061 469 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC087312.1-201ENST00000471411 480 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC021205.2-201ENST00000480069 347 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC006390.1-201ENST00000508068 283 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 RN7SKP18-201ENST00000516005 275 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 SNORA19.3-201ENST00000516165 130 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AP001636.2-201ENST00000525517 696 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 ZNF971P-201ENST00000562068 1249 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC020914.6-201ENST00000594327 272 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC092953.2-201ENST00000608000 699 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC106028.5-201ENST00000610332 395 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AL450489.1-201ENST00000612071 468 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC009269.6-201ENST00000621778 588 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC091925.2-201ENST00000625059 256 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC099654.8-201ENST00000637757 681 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
VPS39Q96JC1 AC090740.1-201ENST00000623193 2262 ntBASIC3.46□□□□□ -1.86
VPS39Q96JC1 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
VPS39Q96JC1 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS39Q96JC1 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS39Q96JC1 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
VPS39Q96JC1 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VPS39Q96JC1 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 RNU6ATAC-201ENST00000408749 126 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 RN7SKP202-201ENST00000410439 330 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 RRM2P4-201ENST00000441721 562 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 SEPT14P24-201ENST00000447236 180 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 RNA5SP310-201ENST00000459084 116 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC006483.1-201ENST00000487308 313 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC091860.1-201ENST00000505723 432 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS39Q96JC1 RNU6-1095P-201ENST00000516148 108 ntBASIC3.45□□□□□ -1.86
VPS39Q96JC1 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms