Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 Y_RNA.4-201ENST00000362333 112 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 NDUFB4P5-201ENST00000415445 361 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.11□□□□□ -1.91
USP54Q70EL1 RPS27AP9-201ENST00000477681 438 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.11□□□□□ -1.91
USP54Q70EL1 NDUFB4P9-201ENST00000511646 388 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 RN7SKP5-201ENST00000517045 272 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 RANP3-201ENST00000530970 276 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 ELOCP31-201ENST00000540463 467 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.11□□□□□ -1.91
USP54Q70EL1 CD24P2-201ENST00000565486 219 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC3.11□□□□□ -1.91
USP54Q70EL1 AC022884.3-201ENST00000579571 248 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.11□□□□□ -1.91
USP54Q70EL1 AC006116.7-201ENST00000590141 756 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USP54Q70EL1 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP54Q70EL1 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.11□□□□□ -1.91
USP54Q70EL1 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USP54Q70EL1 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USP54Q70EL1 RPL5P19-201ENST00000404228 893 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 ARF4P2-201ENST00000430209 526 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 CACYBPP1-201ENST00000438592 684 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 SEPT7P6-201ENST00000469999 1143 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 FAM172BP-201ENST00000487497 1089 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.11□□□□□ -1.91
USP54Q70EL1 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
USP54Q70EL1 AC091564.4-201ENST00000533934 2194 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 AC092184.1-201ENST00000625042 715 ntBASIC3.11□□□□□ -1.91
USP54Q70EL1 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP54Q70EL1 AC092326.2-201ENST00000624772 1561 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP54Q70EL1 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.1□□□□□ -1.91
USP54Q70EL1 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.1□□□□□ -1.91
USP54Q70EL1 RNU6-253P-201ENST00000384730 105 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
USP54Q70EL1 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.1□□□□□ -1.91
USP54Q70EL1 MTATP6P11-201ENST00000428071 670 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.1□□□□□ -1.91
USP54Q70EL1 AL024509.2-201ENST00000493462 493 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 RPS27P27-201ENST00000498779 255 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 AC104090.1-201ENST00000506341 1171 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 MTND4P2-201ENST00000507767 1203 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.1□□□□□ -1.91
USP54Q70EL1 AP001317.1-201ENST00000531194 960 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.1□□□□□ -1.91
USP54Q70EL1 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.1□□□□□ -1.91
USP54Q70EL1 AADACP1-206ENST00000561502 1193 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 AL135786.2-201ENST00000608422 615 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 AC009318.2-201ENST00000610917 651 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 AC067852.7-201ENST00000623270 535 ntBASIC3.1□□□□□ -1.91
USP54Q70EL1 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
USP54Q70EL1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP54Q70EL1 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USP54Q70EL1 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
USP54Q70EL1 SNORA25.6-201ENST00000364121 118 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 SNORA62.2-201ENST00000364672 152 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.09□□□□□ -1.91
USP54Q70EL1 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.09□□□□□ -1.91
USP54Q70EL1 AC004263.1-201ENST00000479327 332 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 RPL23AP49-201ENST00000492925 468 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 AP001086.1-201ENST00000494882 321 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 AC107222.1-201ENST00000510899 637 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.09□□□□□ -1.91
USP54Q70EL1 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.09□□□□□ -1.91
USP54Q70EL1 AC026464.5-201ENST00000562497 722 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 MTCO3P13-201ENST00000577757 781 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 AL159169.2-201ENST00000610061 1269 ntBASIC3.09□□□□□ -1.91
USP54Q70EL1 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.09□□□□□ -1.91
USP54Q70EL1 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
USP54Q70EL1 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
USP54Q70EL1 AC009501.3-201ENST00000605001 1352 ntBASIC3.08□□□□□ -1.92
USP54Q70EL1 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
USP54Q70EL1 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP54Q70EL1 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.08□□□□□ -1.92
USP54Q70EL1 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
USP54Q70EL1 SDCBPP3-201ENST00000419629 891 ntBASIC3.08□□□□□ -1.92
USP54Q70EL1 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.08□□□□□ -1.92
USP54Q70EL1 XKRY-201ENST00000510392 1100 ntBASIC3.08□□□□□ -1.92
USP54Q70EL1 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.08□□□□□ -1.92
USP54Q70EL1 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.08□□□□□ -1.92
USP54Q70EL1 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.08□□□□□ -1.92
USP54Q70EL1 SNRPGP18-201ENST00000553000 214 ntBASIC3.08□□□□□ -1.92
USP54Q70EL1 CR589904.2-201ENST00000612533 440 ntBASIC3.08□□□□□ -1.92
USP54Q70EL1 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.08□□□□□ -1.92
USP54Q70EL1 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
USP54Q70EL1 MIR142-201ENST00000384835 87 ntBASIC3.08□□□□□ -1.92
USP54Q70EL1 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.08□□□□□ -1.92
USP54Q70EL1 MTCYBP20-201ENST00000524239 1129 ntBASIC3.08□□□□□ -1.92
USP54Q70EL1 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC3.08□□□□□ -1.92
USP54Q70EL1 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.08□□□□□ -1.92
USP54Q70EL1 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
USP54Q70EL1 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
USP54Q70EL1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC3.07□□□□□ -1.92
USP54Q70EL1 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.07□□□□□ -1.92
USP54Q70EL1 AL161781.1-201ENST00000354277 403 ntBASIC3.07□□□□□ -1.92
USP54Q70EL1 AL139156.1-201ENST00000412785 841 ntBASIC3.07□□□□□ -1.92
USP54Q70EL1 HSPE1P22-201ENST00000456856 327 ntBASIC3.07□□□□□ -1.92
USP54Q70EL1 CKS1BP2-201ENST00000497342 240 ntBASIC3.07□□□□□ -1.92
USP54Q70EL1 AL645944.1-201ENST00000603857 493 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms