Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC108078.3-201ENST00000502633 489 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC007991.1-201ENST00000522680 631 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 IGKV2D-19-201ENST00000523346 262 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC091515.1-201ENST00000548110 679 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 GTF2IP22-201ENST00000554443 182 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC005412.1-201ENST00000580812 1049 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC008088.1-201ENST00000580993 280 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 VN1R90P-201ENST00000595717 726 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC004987.4-201ENST00000603383 338 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC010680.3-201ENST00000604215 520 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC097065.2-201ENST00000608159 533 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC105429.2-201ENST00000610567 517 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AL603755.1-201ENST00000619504 163 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 AC012314.7-201ENST00000619693 93 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 U6.101-201ENST00000637707 76 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 SAGE4P-201ENST00000442271 3381 ntBASIC4.07□□□□□ -1.76
USP41Q3LFD5 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP41Q3LFD5 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
USP41Q3LFD5 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
USP41Q3LFD5 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
USP41Q3LFD5 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USP41Q3LFD5 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USP41Q3LFD5 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USP41Q3LFD5 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
USP41Q3LFD5 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 MTND4P34-201ENST00000572715 1371 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP41Q3LFD5 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP41Q3LFD5 RN7SKP44-201ENST00000363602 316 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 SNORA11.1-201ENST00000408133 129 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 PIGPP2-201ENST00000411569 458 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 RHEBP3-201ENST00000411920 351 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 HMGN2P31-201ENST00000432430 273 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 MTND2P22-201ENST00000444325 1033 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 RPS15AP17-201ENST00000470598 390 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 RPF2P2-201ENST00000504693 896 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 RNU6-232P-201ENST00000517144 64 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC090616.2-202ENST00000584248 222 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 OR4G1P-201ENST00000588632 938 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP41Q3LFD5 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AC087359.1-201ENST00000508335 1740 ntBASIC4.06□□□□□ -1.76
USP41Q3LFD5 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
USP41Q3LFD5 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.06□□□□□ -1.76
USP41Q3LFD5 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP41Q3LFD5 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP41Q3LFD5 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
USP41Q3LFD5 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP41Q3LFD5 AL391994.1-201ENST00000254724 282 ntBASIC4.05□□□□□ -1.76
USP41Q3LFD5 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP41Q3LFD5 AL024474.1-201ENST00000404655 591 ntBASIC4.05□□□□□ -1.76
USP41Q3LFD5 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 RPS29P4-201ENST00000414733 161 ntBASIC4.05□□□□□ -1.76
USP41Q3LFD5 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 CYP4F29P-201ENST00000420685 446 ntBASIC4.05□□□□□ -1.76
USP41Q3LFD5 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 AL365203.2-201ENST00000423444 196 ntBASIC4.05□□□□□ -1.76
USP41Q3LFD5 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 HSPD1P21-201ENST00000436541 245 ntBASIC4.05□□□□□ -1.76
USP41Q3LFD5 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC4.05□□□□□ -1.76
USP41Q3LFD5 PLGLA-201ENST00000465668 449 ntBASIC4.05□□□□□ -1.76
USP41Q3LFD5 BZW1P2-201ENST00000473537 826 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 153.6 ms