Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 C1DP2-201ENST00000418167 426 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 RPEP2-201ENST00000432149 701 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC009961.2-201ENST00000435771 251 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AL356276.2-201ENST00000435919 558 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 RPL22P17-201ENST00000438729 315 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC127537.2-201ENST00000439258 465 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 NANOGNBP1-201ENST00000448444 480 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 GAPDHP17-201ENST00000449858 1001 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC099563.1-201ENST00000456086 418 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC005008.1-201ENST00000456151 612 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AP1S2P1-201ENST00000457344 379 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 RPS27AP17-201ENST00000463344 455 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC011276.1-201ENST00000469688 323 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC012158.1-204ENST00000483430 465 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 OR5H5P-201ENST00000503164 928 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 PGBD4P4-201ENST00000509673 613 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 RNA5SP497-201ENST00000516081 97 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 RN7SKP244-201ENST00000516513 307 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 RNU6-714P-201ENST00000516963 103 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AP000827.1-201ENST00000527814 258 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC022882.1-201ENST00000532142 501 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AL161713.1-201ENST00000555538 145 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC006960.3-201ENST00000561845 705 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 NRBF2P1-201ENST00000587407 859 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AL161729.4-201ENST00000604650 476 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 MLECP1-201ENST00000615893 709 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 PISRT1-201ENST00000626175 531 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 SEPT14P19-203ENST00000633205 211 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 AC022893.2-201ENST00000564832 3296 ntBASIC4.33□□□□□ -1.72
PTCHD3Q3KNS1 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 Y_RNA.46-201ENST00000362695 102 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RNA5SP258-201ENST00000362750 119 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RNA5SP307-201ENST00000362863 116 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RN7SKP226-201ENST00000364912 300 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RNU6-359P-201ENST00000365466 108 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RPS20P2-201ENST00000402520 389 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AL356421.1-201ENST00000403255 413 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RPL7P25-201ENST00000404151 721 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AL138785.1-201ENST00000425821 331 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RPL17P49-201ENST00000443728 411 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 snoU13.8-201ENST00000458890 104 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 KCTD9P5-201ENST00000504141 1170 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC022483.1-201ENST00000514020 567 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RNU6-430P-201ENST00000517078 107 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 DEFB108A-201ENST00000530110 222 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 HMGB3P26-201ENST00000560051 582 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 TPRKBP2-201ENST00000565969 475 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 VN1R79P-201ENST00000593540 513 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 CKS1BP3-201ENST00000600888 237 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 YWHAQP7-201ENST00000603536 658 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC011468.4-201ENST00000603942 409 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC025588.3-201ENST00000604182 274 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AL160290.3-201ENST00000604869 165 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AL009028.1-201ENST00000604895 802 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 RNU6-87P-201ENST00000607561 108 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 MIR6891-201ENST00000618788 93 ntBASIC4.32□□□□□ -1.72
PTCHD3Q3KNS1 AC007546.2-201ENST00000623996 360 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms