Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC093831.2-201ENST00000624393 3427 ntBASIC2.17□□□□□ -2.06
ABCA4P78363 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.16□□□□□ -2.06
ABCA4P78363 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ABCA4P78363 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.16□□□□□ -2.06
ABCA4P78363 MTCO1P30-201ENST00000515244 580 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC2.16□□□□□ -2.06
ABCA4P78363 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.16□□□□□ -2.06
ABCA4P78363 AC091515.1-201ENST00000548110 679 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC2.16□□□□□ -2.06
ABCA4P78363 AC068313.1-201ENST00000604028 1008 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 AL353997.5-201ENST00000618886 171 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 MIR4278-201ENST00000636094 69 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
ABCA4P78363 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ABCA4P78363 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
ABCA4P78363 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.16□□□□□ -2.06
ABCA4P78363 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.16□□□□□ -2.06
ABCA4P78363 AC092832.1-201ENST00000422934 400 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.16□□□□□ -2.06
ABCA4P78363 AC069277.2-201ENST00000454211 432 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 RPL23AP45-201ENST00000476406 468 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 RNU6-548P-201ENST00000517083 115 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC2.16□□□□□ -2.06
ABCA4P78363 AC015712.3-201ENST00000559380 164 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC2.16□□□□□ -2.06
ABCA4P78363 RPL23AP84-201ENST00000571193 464 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 U4.3-201ENST00000621047 82 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 AC010338.1-201ENST00000621823 717 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ABCA4P78363 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ABCA4P78363 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ABCA4P78363 AC110774.1-201ENST00000623567 2018 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 FAM35BP-202ENST00000497389 3337 ntBASIC2.16□□□□□ -2.06
ABCA4P78363 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
ABCA4P78363 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
ABCA4P78363 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
ABCA4P78363 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.06
ABCA4P78363 EI24P2-201ENST00000397776 1076 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 RPS3AP26-201ENST00000398259 784 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 BTF3P7-201ENST00000407097 488 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 RPS12P2-201ENST00000439728 269 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.15□□□□□ -2.06
ABCA4P78363 AP000873.1-201ENST00000463987 400 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 RPL9P6-201ENST00000492764 598 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 AP000926.3-201ENST00000497201 299 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 AC026436.1-201ENST00000510537 270 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
ABCA4P78363 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
ABCA4P78363 EMP1-206ENST00000537612 505 ntTSL 3 BASIC2.15□□□□□ -2.06
ABCA4P78363 AC025811.1-201ENST00000604312 472 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
ABCA4P78363 NF1P10-201ENST00000613227 742 ntBASIC2.15□□□□□ -2.06
ABCA4P78363 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
ABCA4P78363 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
ABCA4P78363 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.07
ABCA4P78363 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC2.15□□□□□ -2.07
ABCA4P78363 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
ABCA4P78363 RNU6-1331P-201ENST00000363658 106 ntBASIC2.15□□□□□ -2.07
ABCA4P78363 Y_RNA.226-201ENST00000364337 114 ntBASIC2.15□□□□□ -2.07
ABCA4P78363 FAT1P1-201ENST00000406588 507 ntBASIC2.15□□□□□ -2.07
ABCA4P78363 AL450338.1-201ENST00000407987 512 ntBASIC2.15□□□□□ -2.07
ABCA4P78363 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.15□□□□□ -2.07
ABCA4P78363 AL138799.3-201ENST00000438968 350 ntBASIC2.15□□□□□ -2.07
ABCA4P78363 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC2.15□□□□□ -2.07
ABCA4P78363 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.15□□□□□ -2.07
ABCA4P78363 AC023050.1-201ENST00000498198 304 ntBASIC2.15□□□□□ -2.07
ABCA4P78363 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.15□□□□□ -2.07
ABCA4P78363 ABI1P1-201ENST00000603375 1120 ntBASIC2.15□□□□□ -2.07
ABCA4P78363 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
ABCA4P78363 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC2.15□□□□□ -2.07
ABCA4P78363 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
ABCA4P78363 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
ABCA4P78363 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.15□□□□□ -2.07
ABCA4P78363 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
ABCA4P78363 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC2.14□□□□□ -2.07
ABCA4P78363 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.14□□□□□ -2.07
ABCA4P78363 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
ABCA4P78363 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
ABCA4P78363 RNU6-1159P-201ENST00000362933 107 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.14□□□□□ -2.07
ABCA4P78363 MIR518C-201ENST00000384822 101 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 GSTA9P-201ENST00000406231 611 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 NPM1P49-201ENST00000448027 714 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.14□□□□□ -2.07
ABCA4P78363 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC2.14□□□□□ -2.07
ABCA4P78363 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.14□□□□□ -2.07
ABCA4P78363 AC078814.3-201ENST00000553036 491 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC2.14□□□□□ -2.07
ABCA4P78363 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
ABCA4P78363 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.14□□□□□ -2.07
ABCA4P78363 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
ABCA4P78363 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
ABCA4P78363 ZNF542P-204ENST00000482727 1305 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
ABCA4P78363 SNORA51.4-201ENST00000364993 124 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 RNA5SP167-201ENST00000365461 116 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.14□□□□□ -2.07
ABCA4P78363 MTATP6P11-201ENST00000428071 670 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 145.8 ms