Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 HMGB1P50-201ENST00000605814 607 ntBASIC4.42□□□□□ -1.7
CTCFP49711 AP003392.5-201ENST00000607857 415 ntBASIC4.42□□□□□ -1.7
CTCFP49711 AL451074.6-201ENST00000608512 729 ntBASIC4.42□□□□□ -1.7
CTCFP49711 AC021755.4-201ENST00000616620 456 ntBASIC4.42□□□□□ -1.7
CTCFP49711 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CTCFP49711 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CTCFP49711 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
CTCFP49711 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.42□□□□□ -1.7
CTCFP49711 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.42□□□□□ -1.7
CTCFP49711 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CTCFP49711 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.41□□□□□ -1.7
CTCFP49711 ELL2P4-201ENST00000446870 1376 ntBASIC4.41□□□□□ -1.7
CTCFP49711 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.41□□□□□ -1.7
CTCFP49711 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.41□□□□□ -1.7
CTCFP49711 MTND4P13-201ENST00000402078 1023 ntBASIC4.41□□□□□ -1.7
CTCFP49711 MIR1261-201ENST00000408659 82 ntBASIC4.41□□□□□ -1.7
CTCFP49711 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.41□□□□□ -1.7
CTCFP49711 AL008987.1-201ENST00000415528 237 ntBASIC4.41□□□□□ -1.7
CTCFP49711 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4.41□□□□□ -1.7
CTCFP49711 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC4.41□□□□□ -1.7
CTCFP49711 MTCO2P20-201ENST00000437339 673 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC4.41□□□□□ -1.7
CTCFP49711 MTCO2P25-201ENST00000447065 681 ntBASIC4.41□□□□□ -1.7
CTCFP49711 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.41□□□□□ -1.7
CTCFP49711 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.41□□□□□ -1.7
CTCFP49711 RPL21P134-201ENST00000453468 483 ntBASIC4.41□□□□□ -1.7
CTCFP49711 MTCYBP35-201ENST00000503630 1137 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AC034244.1-201ENST00000507687 207 ntBASIC4.41□□□□□ -1.7
CTCFP49711 FABP5P12-201ENST00000515543 389 ntBASIC4.41□□□□□ -1.7
CTCFP49711 RN7SKP277-201ENST00000516895 283 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AC026407.1-201ENST00000518369 204 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.41□□□□□ -1.7
CTCFP49711 AC023538.1-201ENST00000534576 736 ntBASIC4.41□□□□□ -1.7
CTCFP49711 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 AC091515.1-201ENST00000548110 679 ntBASIC4.41□□□□□ -1.7
CTCFP49711 NBEAP1-201ENST00000554452 979 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.41□□□□□ -1.7
CTCFP49711 AL360157.1-201ENST00000565962 87 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.41□□□□□ -1.7
CTCFP49711 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC4.41□□□□□ -1.7
CTCFP49711 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.41□□□□□ -1.7
CTCFP49711 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.41□□□□□ -1.7
CTCFP49711 MRPS35P3-201ENST00000603189 709 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.41□□□□□ -1.7
CTCFP49711 AC080013.3-201ENST00000606839 578 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AC092954.1-201ENST00000609121 445 ntBASIC4.41□□□□□ -1.7
CTCFP49711 MIR7106-201ENST00000612419 65 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AC005332.6-201ENST00000613178 446 ntBASIC4.41□□□□□ -1.7
CTCFP49711 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AC109809.1-201ENST00000619665 545 ntBASIC4.41□□□□□ -1.7
CTCFP49711 AP002791.1-201ENST00000623291 381 ntBASIC4.41□□□□□ -1.7
CTCFP49711 MTND5P3-201ENST00000438536 1800 ntBASIC4.41□□□□□ -1.7
CTCFP49711 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CTCFP49711 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.41□□□□□ -1.7
CTCFP49711 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.41□□□□□ -1.7
CTCFP49711 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CTCFP49711 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CTCFP49711 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CTCFP49711 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
CTCFP49711 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
CTCFP49711 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CTCFP49711 AC007685.1-201ENST00000329806 452 ntBASIC4.4□□□□□ -1.71
CTCFP49711 RNA5SP374-201ENST00000362939 125 ntBASIC4.4□□□□□ -1.71
CTCFP49711 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.4□□□□□ -1.71
CTCFP49711 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.4□□□□□ -1.71
CTCFP49711 RNA5SP306-201ENST00000411087 107 ntBASIC4.4□□□□□ -1.71
CTCFP49711 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.4□□□□□ -1.71
CTCFP49711 OR1AA1P-201ENST00000419597 916 ntBASIC4.4□□□□□ -1.71
CTCFP49711 MTND2P16-201ENST00000419987 799 ntBASIC4.4□□□□□ -1.71
CTCFP49711 AL139413.1-201ENST00000421309 217 ntBASIC4.4□□□□□ -1.71
CTCFP49711 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.4□□□□□ -1.71
CTCFP49711 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.4□□□□□ -1.71
CTCFP49711 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC4.4□□□□□ -1.71
CTCFP49711 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CTCFP49711 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.4□□□□□ -1.71
CTCFP49711 EXTL2P1-201ENST00000446218 416 ntBASIC4.4□□□□□ -1.71
CTCFP49711 HMGB3P22-202ENST00000451823 572 ntBASIC4.4□□□□□ -1.71
CTCFP49711 ACTG1P13-201ENST00000486987 1043 ntBASIC4.4□□□□□ -1.71
CTCFP49711 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.4□□□□□ -1.71
CTCFP49711 RNU7-143P-201ENST00000516781 65 ntBASIC4.4□□□□□ -1.71
CTCFP49711 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CTCFP49711 AC063950.1-201ENST00000552036 308 ntBASIC4.4□□□□□ -1.71
CTCFP49711 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.4□□□□□ -1.71
CTCFP49711 SULT1C2P1-202ENST00000562418 459 ntBASIC4.4□□□□□ -1.71
CTCFP49711 AC245036.5-201ENST00000596330 847 ntBASIC4.4□□□□□ -1.71
CTCFP49711 DUXAP3-201ENST00000603616 594 ntBASIC4.4□□□□□ -1.71
CTCFP49711 AC006077.1-201ENST00000604746 343 ntBASIC4.4□□□□□ -1.71
CTCFP49711 Z99289.3-201ENST00000605586 594 ntBASIC4.4□□□□□ -1.71
CTCFP49711 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.4□□□□□ -1.71
CTCFP49711 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CTCFP49711 SLC10A5P1-201ENST00000379063 1306 ntBASIC4.4□□□□□ -1.71
CTCFP49711 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms