Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MTND6P18-201ENST00000439477 513 ntBASIC3.77□□□□□ -1.81
CUX1P39880 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CUX1P39880 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC3.77□□□□□ -1.81
CUX1P39880 AC012182.1-201ENST00000570133 895 ntBASIC3.77□□□□□ -1.81
CUX1P39880 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.77□□□□□ -1.81
CUX1P39880 AC023813.4-201ENST00000607580 580 ntBASIC3.77□□□□□ -1.81
CUX1P39880 AL353997.5-201ENST00000618886 171 ntBASIC3.77□□□□□ -1.81
CUX1P39880 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CUX1P39880 AC093311.1-201ENST00000506586 2021 ntBASIC3.77□□□□□ -1.81
CUX1P39880 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
CUX1P39880 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.77□□□□□ -1.81
CUX1P39880 AC093010.3-201ENST00000570269 15214 ntBASIC3.76□□□□□ -1.81
CUX1P39880 SNORA67.3-201ENST00000384366 140 ntBASIC3.76□□□□□ -1.81
CUX1P39880 MTCO3P31-201ENST00000405526 789 ntBASIC3.76□□□□□ -1.81
CUX1P39880 AL139156.1-201ENST00000412785 841 ntBASIC3.76□□□□□ -1.81
CUX1P39880 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC3.76□□□□□ -1.81
CUX1P39880 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.76□□□□□ -1.81
CUX1P39880 USP9YP5-201ENST00000511770 630 ntBASIC3.76□□□□□ -1.81
CUX1P39880 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.76□□□□□ -1.81
CUX1P39880 SCARNA16.3-201ENST00000516595 184 ntBASIC3.76□□□□□ -1.81
CUX1P39880 HSPE1P18-201ENST00000517602 280 ntBASIC3.76□□□□□ -1.81
CUX1P39880 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.76□□□□□ -1.81
CUX1P39880 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CUX1P39880 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
CUX1P39880 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CUX1P39880 GABPAP-201ENST00000419271 1356 ntBASIC3.76□□□□□ -1.81
CUX1P39880 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CUX1P39880 AC022336.2-201ENST00000568966 2538 ntBASIC3.76□□□□□ -1.81
CUX1P39880 WWP1P1-201ENST00000466609 2769 ntBASIC3.76□□□□□ -1.81
CUX1P39880 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CUX1P39880 MIR21-201ENST00000362134 72 ntBASIC3.75□□□□□ -1.81
CUX1P39880 MIR142-201ENST00000384835 87 ntBASIC3.75□□□□□ -1.81
CUX1P39880 AL450338.1-201ENST00000407987 512 ntBASIC3.75□□□□□ -1.81
CUX1P39880 AP000893.1-201ENST00000474462 794 ntBASIC3.75□□□□□ -1.81
CUX1P39880 RPL23AP44-201ENST00000482216 473 ntBASIC3.75□□□□□ -1.81
CUX1P39880 AP003467.2-201ENST00000520175 319 ntBASIC3.75□□□□□ -1.81
CUX1P39880 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC3.75□□□□□ -1.81
CUX1P39880 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.75□□□□□ -1.81
CUX1P39880 AP000942.3-201ENST00000603702 160 ntBASIC3.75□□□□□ -1.81
CUX1P39880 AC087468.1-201ENST00000604365 630 ntBASIC3.75□□□□□ -1.81
CUX1P39880 AC010378.1-201ENST00000619270 362 ntBASIC3.75□□□□□ -1.81
CUX1P39880 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CUX1P39880 SDCBPP3-201ENST00000419629 891 ntBASIC3.75□□□□□ -1.81
CUX1P39880 RPL23AP70-201ENST00000483361 460 ntBASIC3.75□□□□□ -1.81
CUX1P39880 AC021733.2-201ENST00000518830 497 ntBASIC3.75□□□□□ -1.81
CUX1P39880 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC3.75□□□□□ -1.81
CUX1P39880 AL845331.3-202ENST00000562856 261 ntBASIC3.75□□□□□ -1.81
CUX1P39880 AP001521.1-201ENST00000609150 300 ntBASIC3.75□□□□□ -1.81
CUX1P39880 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
CUX1P39880 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CUX1P39880 AC008432.1-201ENST00000615912 1320 ntBASIC3.74□□□□□ -1.81
CUX1P39880 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.74□□□□□ -1.81
CUX1P39880 HSPD1P16-201ENST00000402302 394 ntBASIC3.74□□□□□ -1.81
CUX1P39880 AC012498.1-201ENST00000424037 437 ntBASIC3.74□□□□□ -1.81
CUX1P39880 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.74□□□□□ -1.81
CUX1P39880 OR9N1P-201ENST00000491296 333 ntBASIC3.74□□□□□ -1.81
CUX1P39880 AC092185.1-201ENST00000491371 97 ntBASIC3.74□□□□□ -1.81
CUX1P39880 AK6P1-201ENST00000540219 478 ntBASIC3.74□□□□□ -1.81
CUX1P39880 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.74□□□□□ -1.81
CUX1P39880 AC009831.4-201ENST00000620744 325 ntBASIC3.74□□□□□ -1.81
CUX1P39880 AL356266.1-201ENST00000623311 483 ntBASIC3.74□□□□□ -1.81
CUX1P39880 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CUX1P39880 AC002543.1-201ENST00000299783 1954 ntBASIC3.73□□□□□ -1.81
CUX1P39880 AC073136.2-201ENST00000417282 849 ntBASIC3.73□□□□□ -1.81
CUX1P39880 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.73□□□□□ -1.81
CUX1P39880 AC098826.1-201ENST00000433943 471 ntBASIC3.73□□□□□ -1.81
CUX1P39880 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.73□□□□□ -1.81
CUX1P39880 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
CUX1P39880 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.73□□□□□ -1.81
CUX1P39880 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.73□□□□□ -1.81
CUX1P39880 MTCYBP28-201ENST00000566728 1132 ntBASIC3.73□□□□□ -1.81
CUX1P39880 AC135628.1-201ENST00000568867 534 ntBASIC3.73□□□□□ -1.81
CUX1P39880 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC3.73□□□□□ -1.81
CUX1P39880 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.73□□□□□ -1.81
CUX1P39880 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.73□□□□□ -1.81
CUX1P39880 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CUX1P39880 MTND5P29-201ENST00000458676 1807 ntBASIC3.72□□□□□ -1.81
CUX1P39880 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.72□□□□□ -1.81
CUX1P39880 MORF4L1P6-201ENST00000418771 268 ntBASIC3.72□□□□□ -1.81
CUX1P39880 AC234781.4-201ENST00000419384 244 ntBASIC3.72□□□□□ -1.81
CUX1P39880 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.72□□□□□ -1.81
CUX1P39880 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.72□□□□□ -1.81
CUX1P39880 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.72□□□□□ -1.81
CUX1P39880 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
CUX1P39880 HMGB1P41-201ENST00000520234 440 ntBASIC3.72□□□□□ -1.81
CUX1P39880 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.72□□□□□ -1.81
CUX1P39880 MIR4498-201ENST00000577599 66 ntBASIC3.72□□□□□ -1.81
CUX1P39880 AP004247.3-201ENST00000608682 624 ntBASIC3.72□□□□□ -1.81
CUX1P39880 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.72□□□□□ -1.81
CUX1P39880 MIR219B-201ENST00000637023 88 ntBASIC3.72□□□□□ -1.81
CUX1P39880 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CUX1P39880 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.72□□□□□ -1.81
CUX1P39880 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.71□□□□□ -1.81
CUX1P39880 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.81
CUX1P39880 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.71□□□□□ -1.81
CUX1P39880 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CUX1P39880 RPS24P8-201ENST00000431490 402 ntBASIC3.71□□□□□ -1.82
CUX1P39880 HMGB1P48-201ENST00000446155 598 ntBASIC3.71□□□□□ -1.82
CUX1P39880 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.71□□□□□ -1.82
CUX1P39880 FAM92A1P2-202ENST00000504766 877 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms