Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 Y_RNA.465-201ENST00000384293 102 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 MIR217-201ENST00000384817 110 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 BOLA3P4-201ENST00000418151 400 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC012065.2-201ENST00000421295 375 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC236972.1-201ENST00000433225 199 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC010881.1-201ENST00000433830 235 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXC9P31274 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXC9P31274 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXC9P31274 NDUFA5P7-201ENST00000452914 242 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXC9P31274 NF1P3-201ENST00000457709 450 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC108734.3-201ENST00000481241 1165 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC126121.1-201ENST00000482313 553 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXC9P31274 AC008837.2-201ENST00000513076 418 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 RNA5SP135-201ENST00000517019 125 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 PSMA2P1-201ENST00000526365 646 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXC9P31274 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXC9P31274 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXC9P31274 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXC9P31274 AC069545.1-201ENST00000605671 358 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC231759.1-201ENST00000616455 597 ntBASIC4.3□□□□□ -1.72
HOXC9P31274 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXC9P31274 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXC9P31274 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 AL139098.1-201ENST00000407291 389 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 AL161449.1-201ENST00000414531 1199 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AL356968.1-201ENST00000416622 474 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXC9P31274 MRPS36P1-201ENST00000421291 307 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 Z93242.1-201ENST00000427102 353 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXC9P31274 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 CETN4P-201ENST00000432407 469 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 COX7BP2-201ENST00000437976 242 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 USP9YP22-201ENST00000438971 294 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 Z99714.1-201ENST00000450463 807 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AC010683.1-201ENST00000473673 378 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXC9P31274 AC034244.1-201ENST00000507687 207 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXC9P31274 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXC9P31274 NARSP2-201ENST00000518524 679 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXC9P31274 AC090819.1-201ENST00000523800 1111 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.29□□□□□ -1.72
HOXC9P31274 DUXAP5-201ENST00000529668 529 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 MIR4512-201ENST00000583257 77 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXC9P31274 AL357094.1-201ENST00000603845 844 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 AC093732.2-201ENST00000607950 274 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 TUSC7.1-201ENST00000610969 165 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 AC120349.3-201ENST00000624377 529 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 KPNA2P2-201ENST00000419546 1489 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
HOXC9P31274 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXC9P31274 AL592437.2-201ENST00000421655 2434 ntBASIC4.29□□□□□ -1.72
HOXC9P31274 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
HOXC9P31274 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXC9P31274 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HOXC9P31274 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HOXC9P31274 OR5H2-201ENST00000355273 945 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
HOXC9P31274 Y_RNA.192-201ENST00000363977 102 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 SNORD116-23-201ENST00000384645 92 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 RNU6-1300P-201ENST00000391046 108 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 MTND4P13-201ENST00000402078 1023 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 TANK-206ENST00000406287 875 ntTSL 5 BASIC4.28□□□□□ -1.72
HOXC9P31274 AL136133.1-201ENST00000413694 376 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.28□□□□□ -1.72
HOXC9P31274 OFD1P2Y-201ENST00000421895 1149 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 AC002075.2-201ENST00000425207 252 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXC9P31274 RPL23AP82-202ENST00000427528 469 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 BLOC1S2P1-201ENST00000428431 301 ntBASIC4.28□□□□□ -1.72
HOXC9P31274 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC4.28□□□□□ -1.72
HOXC9P31274 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC4.28□□□□□ -1.72
HOXC9P31274 ELOCP23-201ENST00000452014 332 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms